SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

mCh
BBa_J176005 Version 1 (Component)
mCh

lux pR
BBa_R0062 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pR)

fshPCD
BBa_J176002 Version 1 (Component)
fshPCD

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

VP64
BBa_J176013 Version 1 (Component)
VP64

PLflex
BBa_J176040 Version 1 (Component)
PLflex

BBa_J176130
BBa_J176130 Version 1 (Component)
PLflex4

Prm +
BBa_I12007 Version 1 (Component)
Modified lambda Prm promoter (OR-3 obliterated)

BBa_J176132
BBa_J176132 Version 1 (Component)
PLrigid4

RFC105 A
BBa_K1362414 Version 1 (Component)
N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A

Prm +
BBa_I12006 Version 1 (Component)
Modified lamdba Prm promoter (repressed by 434 cI)

BBa_K1321002
BBa_K1321002 Version 1 (Component)
Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25

BBa_K1321003
BBa_K1321003 Version 1 (Component)
Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25

BBa_K1462503
BBa_K1462503 Version 1 (Component)
SH3 domain + Linker

pRE
BBa_K116603 Version 1 (Component)
pRE promoter from λ phage

BBa_K1371024
BBa_K1371024 Version 1 (Component)
Docking domain 5 pre

BBa_K165006
BBa_K165006 Version 1 (Component)
Zif268-HIV DNA-binding domain

BBa_K300002
BBa_K300002 Version 1 (Component)
Phasin (PhaP) - head domain

Fok_a
BBa_K243000 Version 1 (Component)
Protein domain (active) of the restriction endonuclease FokI

Cre
BBa_J61047 Version 1 (Component)
Cre DNA recombinase

RFC105 CC
BBa_K1362419 Version 1 (Component)
C-terminal splicing overhang CAAC=1/3?+Asn RFC[105] standard overhang CC

Gal4DB
BBa_J176020 Version 1 (Component)
Gal4 DB

BBa_J70594
BBa_J70594 Version 1 (Component)
RFC12 TAATAA Tail Domain

preSCsite
BBa_J18919 Version 1 (Component)
preScission protease cleavage site (E. coli-optimized)

BBa_K1371016
BBa_K1371016 Version 1 (Component)
Docking domain 1 pre

BBa_K1371026
BBa_K1371026 Version 1 (Component)
Docking domain 6 pre

BBa_K1371022
BBa_K1371022 Version 1 (Component)
Docking domain 4 pre

BBa_K1371020
BBa_K1371020 Version 1 (Component)
Docking domain 3 pre

BBa_K1371018
BBa_K1371018 Version 1 (Component)
Docking domain 2 pre

BBa_K1462502
BBa_K1462502 Version 1 (Component)
PDZ domain + Linker

SPzim17
BBa_K809201 Version 1 (Component)
signal peptide of ZIM17

mCherry
BBa_K165004 Version 1 (Component)
mCherry, yeast optimized for fusion

BBa_K1371025
BBa_K1371025 Version 1 (Component)
Docking domain 5 suf

NpuDnaE(N)
BBa_K1362400 Version 1 (Component)
NpuDnaE N-Intein cloning piece

BBa_K1423000
BBa_K1423000 Version 1 (Component)
BCLA N-terminal Domain

Sin3
BBa_K165003 Version 1 (Component)
Sin3 Repression Domain

BBa_K747095
BBa_K747095 Version 1 (Component)
TAL-Protein_TT6_Direpeat

AmCyan
BBa_J176022 Version 1 (Component)
AmCyan

RFC105 NC
BBa_K1362417 Version 1 (Component)
C-terminal GG-linker overhang GG<u>TGGT</u>=Gly+Gly RFC[105] overhang NC

BBa_K1638016
BBa_K1638016 Version 1 (Component)
8 aa linker without BamHI restriction site and TEV recognition site

BBa_K1462501
BBa_K1462501 Version 1 (Component)
GBD domian + Linker

BBa_K1092103
BBa_K1092103 Version 1 (Component)
FL3 Lgt FL3

mCitrine
BBa_J18931 Version 1 (Component)
mCitrine

NpuDnaE(C)
BBa_K1362401 Version 1 (Component)
NpuDnaE C-Intein cloning piece

His
BBa_K157011 Version 1 (Component)
His affinity tag; Freiburg standard

DigA
BBa_K243003 Version 1 (Component)
Digoxigenin binding protein (DigA)