SynBioHub

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

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pET fusion
BBa_K1122673 Version 1 (Component)
Ethanol production module

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BBa_K553003
BBa_K553003 Version 1 (Component)
constitutive production of LasR trans-activator

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BBa_I764001
BBa_I764001 Version 1 (Component)
Ethanol regulated promoter AOX1

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C2HP/RGE
BBa_K1442107 Version 1 (Component)
C2HP Testing Module (reverse GFP)

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ldhE-Lc
BBa_K1696001 Version 1 (Component)
L-Lactate producing module from Lactobacillus casei

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Tamura
BBa_K1763444 Version 1 (Component)
Bombyx mori silk co-spinning module

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BBa_K510036
BBa_K510036 Version 1 (Component)
Improved Flip Flop (Module II: asRNA)

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mCherry
BBa_K678020 Version 1 (Component)
mCherry-module

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input-lacI
BBa_S03334 Version 1 (Component)
Constitutive lacI-production to block cI production.

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BBa_K1371039
BBa_K1371039 Version 1 (Component)
loading module+module(1+2)

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mRFP1
BBa_K678030 Version 1 (Component)
mRFP1-module

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BBa_K2155005
BBa_K2155005 Version 1 (Component)
CBM3b module

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eYFP
BBa_K678009 Version 1 (Component)
eYFP-module

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BBa_K2092001
BBa_K2092001 Version 1 (Component)
alcR, ethanol-activated transcription factor from A. nidulans

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BBa_I4204
BBa_I4204 Version 1 (Component)
Prakash *: Syncronator Cell-Signalling Module

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fhlA
BBa_K778001 Version 1 (Component)
fhlA: a transcriptional activator for enhanced hydrogen production

Public

BBa_K799011
BBa_K799011 Version 1 (Component)
Ethanol/Stress Inducible YNL160W Promoter

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BBa_K799010
BBa_K799010 Version 1 (Component)
Ethanol/Stress Inducible YEL039C Promoter

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BBa_K799007
BBa_K799007 Version 1 (Component)
Ethanol/Stress Inducible YMR170C Promoter

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BBa_K799018
BBa_K799018 Version 1 (Component)
Ethanol/Stress Inducible YER150W Promoter

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BBa_K799001
BBa_K799001 Version 1 (Component)
Ethanol/Stress Inducible YJL200C Promoter

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BBa_K799019
BBa_K799019 Version 1 (Component)
Ethanol/Stress Inducible YBR054W Promoter

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BBa_K799012
BBa_K799012 Version 1 (Component)
Ethanol/Stress Inducible YER053C Promoter

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BBa_K799022
BBa_K799022 Version 1 (Component)
Ethanol/Stress Inducible YGL062W Promoter

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BBa_K799005
BBa_K799005 Version 1 (Component)
Ethanol/Stress Inducible YML070W Promoter

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BBa_K799020
BBa_K799020 Version 1 (Component)
Ethanol/Stress Inducible YFR053C Promoter

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BBa_K799016
BBa_K799016 Version 1 (Component)
Ethanol/Stress Inducible YER103W Promoter

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BBa_K799003
BBa_K799003 Version 1 (Component)
Ethanol/Stress Inducible YJL052W Promoter

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BBa_K799004
BBa_K799004 Version 1 (Component)
Ethanol/Stress Inducible YCR021C Promoter

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BBa_K799015
BBa_K799015 Version 1 (Component)
Ethanol/Stress Inducible YOR178C Promoter

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BBa_K799014
BBa_K799014 Version 1 (Component)
Ethanol/Stress Inducible YER065C Promoter

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BBa_K799008
BBa_K799008 Version 1 (Component)
Ethanol/Stress Inducible YDL021W Promoter

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BBa_K799023
BBa_K799023 Version 1 (Component)
Ethanol/Stress Inducible YHL046C Promoter

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BBa_K799021
BBa_K799021 Version 1 (Component)
Ethanol/Stress Inducible YBR126C Promoter

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BBa_K799006
BBa_K799006 Version 1 (Component)
Ethanol/Stress Inducible YDL174C Promoter

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BBa_K799002
BBa_K799002 Version 1 (Component)
Ethanol/Stress Inducible YCR012W Promoter

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BBa_K799017
BBa_K799017 Version 1 (Component)
Ethanol/Stress Inducible YPR006C Promoter

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BBa_K799000
BBa_K799000 Version 1 (Component)
Ethanol/Stress Inducible YCL040W Promoter

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eGFP-PTS
BBa_K678017 Version 1 (Component)
eGFP-PTS-module

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BBa_K564021
BBa_K564021 Version 1 (Component)
aTC regulated promoter module: aTC--PoPS

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fliC_MCS
BBa_K1617000 Version 1 (Component)
Modular Flagellin - FliC_MCS

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eCFP
BBa_K678015 Version 1 (Component)
eCFP-module

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BBa_K1371004
BBa_K1371004 Version 1 (Component)
AT-ACP-L1(loading module)

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BBa_K510019
BBa_K510019 Version 1 (Component)
Improved Flip Flop (Module I)

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BBa_K801020
BBa_K801020 Version 1 (Component)
KlADH4 yeast promoter, ethanol inducible

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BBa_K558001
BBa_K558001 Version 1 (Component)
s70/PDC/ADH Ethanol Generator

Public

BBa_K1587007
BBa_K1587007 Version 1 (Component)
Formate production

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