SynBioHub

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

pBad/araC
BBa_I0500 Version 1 (Component)
Inducible pBad/araC promoter

Public

lux pR
BBa_R0062 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pR)

Public

luxI
BBa_C0061 Version 1 (Component)
autoinducer synthetase for AHL

Public

luxr
BBa_C0062 Version 1 (Component)
luxR repressor/activator, (no LVA?)

Public

BBa_C0261
BBa_C0261 Version 1 (Component)
AHL-making Enzyme, luxI (+RBS)

Public

BBa_I13507
BBa_I13507 Version 1 (Component)
Screening plasmid intermediate

Public

BBa_J04450
BBa_J04450 Version 1 (Component)
RFP Coding Device

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

BBa_I13504
BBa_I13504 Version 1 (Component)
Screening plasmid intermediate

Public

BBa_E0430
BBa_E0430 Version 1 (Component)
EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)

Public

luxI
BBa_C0161 Version 1 (Component)
autoinducer synthetase for AHL (no LVA)

Public

lux pL
BBa_R0063 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pL)<br>

Public

cI+luxR
BBa_R0065 Version 1 (Component)
Promoter (lambda cI and luxR regulated -- hybrid)

Public

GFP report
BBa_E0240 Version 1 (Component)
GFP generator

Public

YFP
BBa_E0032 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

Public

SEGA021
SEGA021 Version 1 (Component)
natural linear DNA.

Public

EYFP
BBa_E0034 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

Public

SEGA022
SEGA022 Version 1 (Component)
natural linear DNA.

Public

BBa_I13940
BBa_I13940 Version 1 (Component)
Exogenous LuxI Relaxation Oscillator Test Construct Intermediate (I0500.C0261.E0434)

Public

LuxR
BBa_I0462 Version 1 (Component)
luxR Protein Generator

Public

BBa_I13401
BBa_I13401 Version 1 (Component)
GFP reporter for RHS of library test constructs

Public

BBa_I13942
BBa_I13942 Version 1 (Component)
Exogenous AiiA Relaxation Oscillator Test Construct Intermediate (I0500.C0260.E0424)

Public

BBa_I13941
BBa_I13941 Version 1 (Component)
Exogenous LuxI Relaxation Oscillator Test Construct Intermediate (R0062.C0260.E0424)

Public

GFP genera
BBa_E0840 Version 1 (Component)
GFP generator

Public

BBa_I13943
BBa_I13943 Version 1 (Component)
Exogenous AiiA Relaxation Oscillator Test Construct Intermediate (R0062.B0034.C0061.E0434)

Public

BBa_I13977
BBa_I13977 Version 1 (Component)
intermediate for lac relaxation oscillator

Public

BBa_E0432
BBa_E0432 Version 1 (Component)
EYFP (RBS+ LVA+ TERM) (B0034.E0032.B0015)

Public

//test
test Version 1 (Collection)

Public

BBa_I13023
BBa_I13023 Version 1 (Component)
QPI Test Construct Intermediate (Q01400.E0430)

Public

BBa_I13950
BBa_I13950 Version 1 (Component)
Exogenous LuxI Relaxation Oscillator Test Construct (I13940.I13941)

Public

BBa_I13500
BBa_I13500 Version 1 (Component)
Screening plasmid intermediate

Public

mRFP1
BBa_I13502 Version 1 (Component)
Screening plasmid intermediate

Public

BBa_K082014
BBa_K082014 Version 1 (Component)
C0261-B0015

Public

BBa_I13021
BBa_I13021 Version 1 (Component)
QPI Test Construct Intermediate (Q04121.E0430)

Public

BBa_K546000
BBa_K546000 Version 1 (Component)
Lux pL controlled LuxR with lux pR autoinducing LuxI(lva tag)- AHL.

Public

BBa_I13951
BBa_I13951 Version 1 (Component)
Exogenous AiiA Relaxation Oscillator Test Construct (I13942.I13943)

Public

BBa_I6058
BBa_I6058 Version 1 (Component)
Promoter O_H Test I0500.E0430

Public

BBa_I6088
BBa_I6088 Version 1 (Component)
Promoter O_H Test I0500.E0432

Public

BBa_I13976
BBa_I13976 Version 1 (Component)
intermediate for lac relaxation oscillator

Public

BBa_I13020
BBa_I13020 Version 1 (Component)
QPI Test Construct Intermediate (Q04530.E0430)

Public

//test1
test1 Version 1 (Collection)

Public

BBa_J09855
BBa_J09855 Version 1 (Component)
Constitutive luxR device with pLuxR

Public

BBa_I13209
BBa_I13209 Version 1 (Component)
Relaxation Oscillator Test Construct (I13202.B0015.I0460)

Public

BBa_I13024
BBa_I13024 Version 1 (Component)
QPI Test Construct Intermediate (Q01121.E0430)

Public

BBa_E0434
BBa_E0434 Version 1 (Component)
B0034.E0034.B0015

Public

BBa_E0615
BBa_E0615 Version 1 (Component)
I0500.Q04530.E0430

Public

pLux/Tet
BBa_K176000 Version 1 (Component)
pLux/Tet Hybrid Promoter: (LuxR+,TetR-)->PoPS

Public

BBa_I13019
BBa_I13019 Version 1 (Component)
QPI Test Construct Intermediate (Q04510.E0430)

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