SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

lux pR
BBa_R0062 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pR)

luxr
BBa_C0062 Version 1 (Component)
luxR repressor/activator, (no LVA?)

luxI
BBa_C0061 Version 1 (Component)
autoinducer synthetase for AHL

BBa_I13507
BBa_I13507 Version 1 (Component)
Screening plasmid intermediate

BBa_J04450
BBa_J04450 Version 1 (Component)
RFP Coding Device

BBa_C0261
BBa_C0261 Version 1 (Component)
AHL-making Enzyme, luxI (+RBS)

lux pL
BBa_R0063 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pL)<br>

cI+luxR
BBa_R0065 Version 1 (Component)
Promoter (lambda cI and luxR regulated -- hybrid)

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_I13504
BBa_I13504 Version 1 (Component)
Screening plasmid intermediate

OmpR
BBa_R0082 Version 1 (Component)
Promoter (OmpR, positive)

aiiA
BBa_C0060 Version 1 (Component)
autoinducer inactivation enzyme from Bacillus; hydrolyzes acetyl homoserine lactone

luxI
BBa_C0161 Version 1 (Component)
autoinducer synthetase for AHL (no LVA)

GFP report
BBa_E0240 Version 1 (Component)
GFP generator

YFP
BBa_E0032 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

SEGA021
SEGA021 Version 1 (Component)
natural linear DNA.

BBa_E0420
BBa_E0420 Version 1 (Component)
ECFP (RBS+ LVA- TERM) (B0034.E0020.B0015)

BBa_I13941
BBa_I13941 Version 1 (Component)
Exogenous LuxI Relaxation Oscillator Test Construct Intermediate (R0062.C0260.E0424)

SEGA022
SEGA022 Version 1 (Component)
natural linear DNA.

BBa_A340620
BBa_A340620 Version 1 (Component)
Quadpart Amplifier (B0034.C0062.B0015.R0062)

BBa_E0422
BBa_E0422 Version 1 (Component)
ECFP (RBS+ LVA+ TERM) (B0034.E0022.B0015)

LuxR
BBa_I0462 Version 1 (Component)
luxR Protein Generator

BBa_I13401
BBa_I13401 Version 1 (Component)
GFP reporter for RHS of library test constructs

BBa_I13940
BBa_I13940 Version 1 (Component)
Exogenous LuxI Relaxation Oscillator Test Construct Intermediate (I0500.C0261.E0434)

BBa_I13942
BBa_I13942 Version 1 (Component)
Exogenous AiiA Relaxation Oscillator Test Construct Intermediate (I0500.C0260.E0424)

GFP genera
BBa_E0840 Version 1 (Component)
GFP generator

BBa_I13943
BBa_I13943 Version 1 (Component)
Exogenous AiiA Relaxation Oscillator Test Construct Intermediate (R0062.B0034.C0061.E0434)

cI 434
BBa_R0052 Version 1 (Component)
Promoter (434 cI regulated)

BBa_I13977
BBa_I13977 Version 1 (Component)
intermediate for lac relaxation oscillator

aiiA
BBa_C0160 Version 1 (Component)
autoinducer inactivation enzyme aiiA (no LVA)

BBa_I13950
BBa_I13950 Version 1 (Component)
Exogenous LuxI Relaxation Oscillator Test Construct (I13940.I13941)

BBa_I13500
BBa_I13500 Version 1 (Component)
Screening plasmid intermediate

lux pR
BBa_R1062 Version 1 (Component)
Promoter, Standard (luxR and HSL regulated -- lux pR)<br>

mRFP1
BBa_I13502 Version 1 (Component)
Screening plasmid intermediate

BBa_K546000
BBa_K546000 Version 1 (Component)
Lux pL controlled LuxR with lux pR autoinducing LuxI(lva tag)- AHL.

BBa_I13951
BBa_I13951 Version 1 (Component)
Exogenous AiiA Relaxation Oscillator Test Construct (I13942.I13943)

BBa_I13976
BBa_I13976 Version 1 (Component)
intermediate for lac relaxation oscillator

BBa_S01003
BBa_S01003 Version 1 (Component)
R0062.E0422

ECFP
BBa_E0024 Version 1 (Component)
enhanced cyan fluorescent protein derived from A. victoria GFP

BBa_J09855
BBa_J09855 Version 1 (Component)
Constitutive luxR device with pLuxR

BBa_S01004
BBa_S01004 Version 1 (Component)
E0432.R0062.E0422

BBa_I13023
BBa_I13023 Version 1 (Component)
QPI Test Construct Intermediate (Q01400.E0430)

BBa_I13209
BBa_I13209 Version 1 (Component)
Relaxation Oscillator Test Construct (I13202.B0015.I0460)

BBa_K082014
BBa_K082014 Version 1 (Component)
C0261-B0015

pLux/Tet
BBa_K176000 Version 1 (Component)
pLux/Tet Hybrid Promoter: (LuxR+,TetR-)->PoPS

BBa_E0430
BBa_E0430 Version 1 (Component)
EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)