Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

CD4 signal
BBa_I712009 Version 1 (Component)
CD4 signal peptide; localizes to plasma membrane

BBa_K1478000
BBa_K1478000 Version 1 (Component)
Expa4 plant secretion signal, localizes to extracellular space

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K554002
BBa_K554002 Version 1 (Component)
HlyA secretion signal peptide

spacer
BBa_B0040 Version 1 (Component)
Spacer.1 (generic)

BBa_K209402
BBa_K209402 Version 1 (Component)
AarI A-B part, signal sequence-FLAG-YFP [SSFYFP]

SP-aprE
BBa_K1674000 Version 1 (Component)
Secretion signal peptide originated from the B.subtilis extracellular protease AprE

BBa_K215001
BBa_K215001 Version 1 (Component)
Secretion Signal and Streptavidin Binding Tags

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

BBa_J64029
BBa_J64029 Version 1 (Component)
sopD secretion signal

BBa_K416003
BBa_K416003 Version 1 (Component)
Yeast Secretion Tag

BBa_K215002
BBa_K215002 Version 1 (Component)
pLac+RBS+Secretion Signal and Streptavidin Binding Tags

BBa_J36835
BBa_J36835 Version 1 (Component)
Lipoprotein signal peptide

BBa_J64027
BBa_J64027 Version 1 (Component)
sopB Secretion Signal

BBa_J64012
BBa_J64012 Version 1 (Component)
SipA Secretion Signal

BBa_J64016
BBa_J64016 Version 1 (Component)
sopE2 Secretion Signal

BBa_J64023
BBa_J64023 Version 1 (Component)
sipC Secretion Signal

BBa_J64014
BBa_J64014 Version 1 (Component)
sopA Secretion Signal

BBa_J64017
BBa_J64017 Version 1 (Component)
invJ Secretion Signal

BBa_K215107
BBa_K215107 Version 1 (Component)
Extracellular Secretion System

myristoila
BBa_I712026 Version 1 (Component)
myristoilation signal sequence; anchors protein to membrane

SPzim17
BBa_K809201 Version 1 (Component)
signal peptide of ZIM17

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K1365169
BBa_K1365169 Version 1 (Component)
signal sequence from USP45 fused to aiiA

BBa_K215108
BBa_K215108 Version 1 (Component)
Extracellular Secretion System Medium Promoter

BBa_K215109
BBa_K215109 Version 1 (Component)
Extracellular Secretion System Low Promoter

BBa_K1800001
BBa_K1800001 Version 1 (Component)
Alpha-Factor Secretion Signal

BBa_K212004
BBa_K212004 Version 1 (Component)
secretion signal peptide + GFPmut3b

BBa_K1824889
BBa_K1824889 Version 1 (Component)
A Transcriptional Spacer Sequence

Yeb-Art175
BBa_K1659003 Version 1 (Component)
Artilysin Art-175 fused at N-terminal with porin-dependent YebF secretion signal protein

BBa_K2116090
BBa_K2116090 Version 1 (Component)
Spacer for BB assembly

BBa_K2136018
BBa_K2136018 Version 1 (Component)
Ars2 signal peptide for secretion in Chlamydomonas

BBa_M1008
BBa_M1008 Version 1 (Component)
HlyA secretion signal with stop codon

BBa_K215012
BBa_K215012 Version 1 (Component)
Secretion Signal and Streptavidin Binding Tags on GFP