SynBioHub

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

MtrB
BBa_K1748001 Version 1 (Component)
Extracelllular metal reducing respiratory system integral outer-membrane β-barrel protein MtrB

Public

OmpA
BBa_K103006 Version 1 (Component)
OmpA outer membrane protein A fused to linker; displays proteins on cell surface

Public

CD4 signal
BBa_I712009 Version 1 (Component)
CD4 signal peptide; localizes to plasma membrane

Public

BBa_I746200
BBa_I746200 Version 1 (Component)
FepA L8T Mutant - Large Diffusion pore for E. coli outer membrane.

Public

MtrC
BBa_K1748003 Version 1 (Component)
Extracelllular metal reducing respiratory system periplasmic decaheme cytochrome C component MtrC

Public

OmcA
BBa_K1748002 Version 1 (Component)
Extracelllular metal reducing respiratory system periplasmic decaheme Cytochrome C component OmcA

Public

MtrA
BBa_K1748000 Version 1 (Component)
Extracelllular metal reducing respiratory system periplasmic decaheme cytochrome C component MtrA

Public

oprF
BBa_K1172501 Version 1 (Component)
Outer membrane porin OprF from Pseudomonas fluorescens

Public

//cds/membrane/extracellular
cds_membrane_extracellular Version 1 (Collection)

Public

BBa_K1051105
BBa_K1051105 Version 1 (Component)
TOM40;targeting peptide to mitochondria outer membrane

Public

BBa_J36837
BBa_J36837 Version 1 (Component)
Outer membrane protein A, aa 46-159

Public

BBa_J36836
BBa_J36836 Version 1 (Component)
Outer membrane protein A, aa 46-66

Public

BBa_I746009
BBa_I746009 Version 1 (Component)
AIP generator + outer membrane permeability

Public

BBa_K371049
BBa_K371049 Version 1 (Component)
MPF(meta-prefix)

Public

PelB
BBa_J32015 Version 1 (Component)
PelB leader sequence; directs protein to E. coli periplasmic membrane

Public

BBa_M1028
BBa_M1028 Version 1 (Component)
tolC-Outer membrane protein

Public

BBa_K371050
BBa_K371050 Version 1 (Component)
MSF(meta-suffix)

Public

BBa_K331008
BBa_K331008 Version 1 (Component)
Outer Membrane Protein OmpA

Public

//binding/metal
binding_metal Version 1 (Collection)

Public

BBa_K1393003
BBa_K1393003 Version 1 (Component)
outer membrane porin protein C from Escherichia coli BL21(DE3)

Public

BBa_K1051106
BBa_K1051106 Version 1 (Component)
targeting peptide to mitochondria outer membrane

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BBa_M1785
BBa_M1785 Version 1 (Component)
integral membrane protein

Public

eCPX-nSA-c
BBa_M50000 Version 1 (Component)
Streptavidin binding outer membrane protein

Public

fhuA
BBa_K259000 Version 1 (Component)
fhuA - Outer membrane transporter for ferrichrome-iron

Public

BBa_K259011
BBa_K259011 Version 1 (Component)
OsmE-Outer Membrane Protein in E.coli

Public

BBa_K1051104
BBa_K1051104 Version 1 (Component)
VDAC1;targeting peptide to mitochondria outer membrane

Public

BBa_M1004
BBa_M1004 Version 1 (Component)
HlyD Membrane Protein

Public

Bxb1_Int
BBa_K907000 Version 1 (Component)
Mycobacterium Phage Bxb1 gp35, DNA integrase

Public

BBa_K1761000
BBa_K1761000 Version 1 (Component)
Outer Membrane Protein X (OmpX)

Public

BBa_K2045002
BBa_K2045002 Version 1 (Component)
fhuA:Ferrichrome Iron outer membrane transporter

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COMPy
BBa_K1492001 Version 1 (Component)
Clickable Outer Membrane Protein y

Public

COMPx
BBa_K1492000 Version 1 (Component)
Clickable Outer Membrane Protein x

Public

BBa_I746202
BBa_I746202 Version 1 (Component)
Outer Membrane Permeability Device

Public

BBa_I746201
BBa_I746201 Version 1 (Component)
Outer Membrane Permeability Device

Public

ompA
BBa_K1019005 Version 1 (Component)
ompA: outer membrane protein 3a

Public

BBa_K1151001
BBa_K1151001 Version 1 (Component)
Histidine-rich metal-binding protein

Public

BBa_K1811333
BBa_K1811333 Version 1 (Component)
CUP1 metallothionein fused to LamB on outer membrane

Public

BBa_K117000
BBa_K117000 Version 1 (Component)
Lysis gene (promotes lysis in colicin-producing bacteria strain)

Public

BBa_I746010
BBa_I746010 Version 1 (Component)
AIP generator + outer membrane permeability

Public

BBa_K2123300
BBa_K2123300 Version 1 (Component)
Strong promoter + OmpA (outer membrane protein)

Public

BBa_K215107
BBa_K215107 Version 1 (Component)
Extracellular Secretion System

Public

//function/sensor/metal
function_sensor_metal Version 1 (Collection)

Public

//cds/membrane
cds_membrane Version 1 (Collection)

Public

BBa_K300003
BBa_K300003 Version 1 (Component)
Phasin (PhaP) - internal domain

Public

BBa_I746203
BBa_I746203 Version 1 (Component)
Intermediate for Outer Membrane Permeability Device

Public

BBa_K1051108
BBa_K1051108 Version 1 (Component)
targeting peptide to mitochondria outer membrane;Tom20

Public

BBa_K1051103
BBa_K1051103 Version 1 (Component)
TOM22, targeting peptide to mitochondria outer membrane

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