iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
mRFP1BBa_E1010 Version 1 (Component)**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_K176233BBa_K176233 Version 1 (Component)For characterization of K176230: VR9+pCon 0.15->K176230
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
BBa_K176244BBa_K176244 Version 1 (Component)For characterization of K176240: VR9+pCon 0.15->K176240->PoPS
BBa_K176234BBa_K176234 Version 1 (Component)For characterization of K176230: VR8+pCon 0.04->K176230
BBa_K176232BBa_K176232 Version 1 (Component)For characterization of K176230: VR7+pCon 0.36->K176230
BBa_K176231BBa_K176231 Version 1 (Component)For characterization of K176230: VR4+pCon 0.70->K176230
BBa_K176235BBa_K176235 Version 1 (Component)For characterization of K176230: VR5+pCon 0.01->K176230
pCon 0.15BBa_K176008 Version 1 (Component)constitutive promoter family member J23115 actual sequence (pCon 0.15)
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_K176243BBa_K176243 Version 1 (Component)For characterization of K176240: VR7+pCon 0.36->K176240->PoPS
BBa_K176245BBa_K176245 Version 1 (Component)For characterization of K176240: VR5+pCon 0.01->K176240->PoPS
BBa_J56012BBa_J56012 Version 1 (Component)Invertible sequence of dna includes Ptrc promoter
BBa_K176236BBa_K176236 Version 1 (Component)For characterization of K176226: VR7+pCon 0.36->K176226
G-His6(N)BBa_K1362430 Version 1 (Component)C-terminal His6 (N-Intein)
FurBO_11498 Version 1 (Component) BBa_K176030BBa_K176030 Version 1 (Component)Repressible AHL->GFP Receiver: PoPS->tetR-LVA+pCon 0.70->luxR+pLux/Tet->GFP
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_I13401BBa_I13401 Version 1 (Component)GFP reporter for RHS of library test constructs
TerDnaE3(NBBa_K1362130 Version 1 (Component)RBS + TerDnaE3 N-intein RFC[105] assembly construct (with His6)
pSC101BBa_I50041 Version 1 (Component)pSC101 origin of replication, reverse
BBa_K880005BBa_K880005 Version 1 (Component)Strong promoter, strong RBS combination for high expression levels of proteins
BBa_K176130BBa_K176130 Version 1 (Component)TetR repressible AHL->GFP Receiver (Low LuxR): pCon 0.04->luxR+pLux/Tet->GFP
PRKBBa_K1462310 Version 1 (Component)Phosphoribulokinase (from Spinacia oleracea)
BBa_K176230BBa_K176230 Version 1 (Component)High input score automatic selector (with reporter): PoPS->GFP->K176229
VR4BBa_K176048 Version 1 (Component)Reverse primer VR4 (bind to K176038), member of VR3~VR12
VR5BBa_K176049 Version 1 (Component)Reverse primer VR5 (bind to K176039), member of VR3~VR12
VR6BBa_K176050 Version 1 (Component)Reverse primer VR6 (bind to K176040), member of VR3~VR12
pCon 0.36BBa_K176009 Version 1 (Component)constitutive promoter family member J23107 actual sequence (pCon 0.36)
BBa_K176239BBa_K176239 Version 1 (Component)High input score automatic selector: PoPS->luxI-LVA->K176228
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
BBa_K176200BBa_K176200 Version 1 (Component)Cell density controller: pCon 0.70->luxI-LVA+pCon 0.70->luxR+pLux/Tet->lacZalpha-ccdB-LVA(weak RBS)
BBa_K176203BBa_K176203 Version 1 (Component)Cell density controller: pCon 0.36->luxI-LVA+pCon 0.70->luxR+pLux/Tet->ccdB-LVA(weak RBS)