Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

LysA
BBa_K284001 Version 1 (Component)
Lysozyme from Gallus gallus

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_K584001
BBa_K584001 Version 1 (Component)
Constitutive promoter + GFP generator

Subtilin P
BBa_K104001 Version 1 (Component)
Sensor for small peptide Subtilin

BBa_K2084001
BBa_K2084001 Version 1 (Component)
T3 Unit

BBa_K264001
BBa_K264001 Version 1 (Component)
Modular UP-element Design 2

BBa_K081001
BBa_K081001 Version 1 (Component)
Mux CH1

BBa_K084007
BBa_K084007 Version 1 (Component)
Lac repressible lasI generator (No LVA )

BBa_K085001
BBa_K085001 Version 1 (Component)
pGLO GFP

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K284003
BBa_K284003 Version 1 (Component)
Partial DLD Promoter from Kluyveromyces lactis

BBa_K284002
BBa_K284002 Version 1 (Component)
JEN1 Promoter from Kluyveromyces lactis

tetA(C)f
BBa_J31007 Version 1 (Component)
tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]

BBa_K284000
BBa_K284000 Version 1 (Component)
Lactate Permease from Kluyveromyces lactis

BBa_K094001
BBa_K094001 Version 1 (Component)
CheZ

BBa_K2184001
BBa_K2184001 Version 1 (Component)
Guid RNA for grapefroit flavor

BBa_K248001
BBa_K248001 Version 1 (Component)
nsrR (nitrite-sensitive transcription repressor)

BBa_K082001
BBa_K082001 Version 1 (Component)
RBS medium

BBa_K284008
BBa_K284008 Version 1 (Component)
tra operon promoter (Py)

BBa_K284031
BBa_K284031 Version 1 (Component)
Cre Recombinase without start codon

BBa_K184001
BBa_K184001 Version 1 (Component)
Silintaphin-1 + gs linker partB

BBa_K234001
BBa_K234001 Version 1 (Component)
-- No description --

MelA
BBa_K274001 Version 1 (Component)
melanin pigment

BBa_K287001
BBa_K287001 Version 1 (Component)
Chloride Protein

BBa_K289001
BBa_K289001 Version 1 (Component)
pp1(I type Protein phosphotransferase)

BBa_K282001
BBa_K282001 Version 1 (Component)
Double Terminator

BBa_K288001
BBa_K288001 Version 1 (Component)
Pseudomona putida protein

BBa_K284007
BBa_K284007 Version 1 (Component)
tra operon promoter (Py)

BBa_K214001
BBa_K214001 Version 1 (Component)
Pconst-RBS-Lpp-OmpA-Linker-TEV-TEV-Linker-ANP

BBa_K284009
BBa_K284009 Version 1 (Component)
Forward Primer to BBa_K284002

BBa_K284005
BBa_K284005 Version 1 (Component)
Reverse Primer to BBa_K284000

BBa_K284010
BBa_K284010 Version 1 (Component)
Reverse Primer to BBa_K284002

BBa_K284004
BBa_K284004 Version 1 (Component)
Forward Primer to BBa_K284000

BBa_K284011
BBa_K284011 Version 1 (Component)
Forward Primer to BBa_K284003

BBa_K084002
BBa_K084002 Version 1 (Component)
Venus YFP with RBS (yeast-optimized)

BBa_K283001
BBa_K283001 Version 1 (Component)
pT7-rbs-(sp_eGFP_streptavidin_AIDAc)-Terminators

pT7_xyIE
BBa_K784001 Version 1 (Component)
pT7_RBS_xyIE reporter gene