Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_K784002
BBa_K784002 Version 1 (Component)
T7 Terminator

LysA
BBa_K284001 Version 1 (Component)
Lysozyme from Gallus gallus

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_K584002
BBa_K584002 Version 1 (Component)
pLac-Lux hybrid + GFP generator

BBa_K094002
BBa_K094002 Version 1 (Component)
plambda P(O-R12)

BBa_K284002
BBa_K284002 Version 1 (Component)
JEN1 Promoter from Kluyveromyces lactis

BBa_K084007
BBa_K084007 Version 1 (Component)
Lac repressible lasI generator (No LVA )

BBa_K2084002
BBa_K2084002 Version 1 (Component)
pT7 Toehold

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K284003
BBa_K284003 Version 1 (Component)
Partial DLD Promoter from Kluyveromyces lactis

tetA(C)f
BBa_J31007 Version 1 (Component)
tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]

BBa_K284032
BBa_K284032 Version 1 (Component)
finO conjugal transfer fertility inhibition protein FinO from Plasmid R100

BBa_K284000
BBa_K284000 Version 1 (Component)
Lactate Permease from Kluyveromyces lactis

BBa_K2184002
BBa_K2184002 Version 1 (Component)
Guid RNA for coffee bitterness flavor

BBa_K248002
BBa_K248002 Version 1 (Component)
nirK (nitrite reductase)

BBa_K264002
BBa_K264002 Version 1 (Component)
Modular UP-element Design 3

BBa_K274002
BBa_K274002 Version 1 (Component)
Vio operon

BBa_K284008
BBa_K284008 Version 1 (Component)
tra operon promoter (Py)

BBa_K084002
BBa_K084002 Version 1 (Component)
Venus YFP with RBS (yeast-optimized)

BBa_K289002
BBa_K289002 Version 1 (Component)
GSH

BBa_K214002
BBa_K214002 Version 1 (Component)
Mature Atrial Natriuretic Peptide (ANP)

BBa_K284007
BBa_K284007 Version 1 (Component)
tra operon promoter (Py)

BBa_K124002
BBa_K124002 Version 1 (Component)
Yeast GPD (TDH3) Promoter

BBa_K284022
BBa_K284022 Version 1 (Component)
T4 endolysin under the control of T7 promotor

BBa_K084012
BBa_K084012 Version 1 (Component)
Lac repressible 3OC6HSL generator (No LVA)

BBa_K284009
BBa_K284009 Version 1 (Component)
Forward Primer to BBa_K284002

BBa_K284005
BBa_K284005 Version 1 (Component)
Reverse Primer to BBa_K284000

BBa_K284004
BBa_K284004 Version 1 (Component)
Forward Primer to BBa_K284000

BBa_K284012
BBa_K284012 Version 1 (Component)
Reverse Primer to BBa_K284003

BBa_K283002
BBa_K283002 Version 1 (Component)
Speed control device (pLacI-rbs-TetR-terminator-ptet-rbs-chez_his-double terminators)

BBa_K1084002
BBa_K1084002 Version 1 (Component)
promoter 2

BBa_K1484002
BBa_K1484002 Version 1 (Component)
AmajLime chromoprotein in BBa and MoClo standard

BBa_K284020
BBa_K284020 Version 1 (Component)
EYFP regulated by lactate responsive promoter (JEN1)

BBa_K084005
BBa_K084005 Version 1 (Component)
LasR generator

TEV cut si
BBa_K128002 Version 1 (Component)
TEV tobacco etch virus protease cleavage site

BBa_K104002
BBa_K104002 Version 1 (Component)
Prom_spaRK