Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM Feature Libraries
igem_feature_libraries_collection Version 1 (Unknown)
A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

Free Genes Feature Libraries
free_genes_feature_libraries_collection Version 1 (Unknown)
A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

mRFP1
BBa_E1010 Version 1 (Component)
**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)

BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

lacZ-alpha
BBa_I732006 Version 1 (Component)
lacZ alpha fragment

BBa_B0033
BBa_B0033 Version 1 (Component)
RBS.4 (weaker) -- derivative of BBa_0030

BBa_J56012
BBa_J56012 Version 1 (Component)
Invertible sequence of dna includes Ptrc promoter

BBa_K2066019
BBa_K2066019 Version 1 (Component)
UNS 3 Sequence, from Torella et al., 2013

BBa_K337100
BBa_K337100 Version 1 (Component)
Fragment 3 of wt AAV9

Prm +
BBa_I12007 Version 1 (Component)
Modified lambda Prm promoter (OR-3 obliterated)

BBa_K337084
BBa_K337084 Version 1 (Component)
Fragment 3 of wt AAV6

BBa_K337076
BBa_K337076 Version 1 (Component)
Fragment 3 of wt AAV5

BBa_K337092
BBa_K337092 Version 1 (Component)
Fragment 3 of wt AAV8

BBa_K337068
BBa_K337068 Version 1 (Component)
Fragment 3 of wt AAV2

BBa_K337060
BBa_K337060 Version 1 (Component)
Fragment 3 of wt AAV1

pSC101
BBa_I50041 Version 1 (Component)
pSC101 origin of replication, reverse

BBa_K337103
BBa_K337103 Version 1 (Component)
Fragment 6 of wt AAV9

BBa_K337098
BBa_K337098 Version 1 (Component)
Fragment 1 of wt AAV9

BBa_K337101
BBa_K337101 Version 1 (Component)
Fragment 4 of wt AAV9

BBa_K337102
BBa_K337102 Version 1 (Component)
Fragment 5 of wt AAV9

BBa_K337105
BBa_K337105 Version 1 (Component)
Fragment 8 of wt AAV9

BBa_K337104
BBa_K337104 Version 1 (Component)
Fragment 7 of wt AAV9

BBa_K337099
BBa_K337099 Version 1 (Component)
Fragment 2 of wt AAV9

BBa_K337086
BBa_K337086 Version 1 (Component)
Fragment 5 of wt AAV6

BBa_K337077
BBa_K337077 Version 1 (Component)
Fragment 4 of wt AAV5

BBa_K337087
BBa_K337087 Version 1 (Component)
Fragment 6 of wt AAV6

BBa_K337083
BBa_K337083 Version 1 (Component)
Fragment 2 of wt AAV6

BBa_K337072
BBa_K337072 Version 1 (Component)
Fragment 7 of wt AAV2

BBa_K337075
BBa_K337075 Version 1 (Component)
Fragment 2 of wt AAV5

BBa_K337074
BBa_K337074 Version 1 (Component)
Fragment 1 of wt AAV5

BBa_K337093
BBa_K337093 Version 1 (Component)
Fragment 4 of wt AAV8

BBa_K337095
BBa_K337095 Version 1 (Component)
Fragment 6 of wt AAV8

BBa_K337065
BBa_K337065 Version 1 (Component)
Fragment 8 of wt AAV1

BBa_K337066
BBa_K337066 Version 1 (Component)
Fragment 1 of wt AAV2

BBa_K337090
BBa_K337090 Version 1 (Component)
Fragment 1 of wt AAV8

BBa_K337069
BBa_K337069 Version 1 (Component)
Fragment 4 of wt AAV2

BBa_K337089
BBa_K337089 Version 1 (Component)
Fragment 8 of wt AAV6

BBa_K337097
BBa_K337097 Version 1 (Component)
Fragment 8 of wt AAV8