Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
Amp CasBBa_I13800 Version 1 (Component)Ampicillin Resistance Cassette
BBa_I750016BBa_I750016 Version 1 (Component)Gas Vesicle polycistonic gene
GerEBO_11469 Version 1 (Component) SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_K190074BBa_K190074 Version 1 (Component)Gas Vesicle polycistonic gene without repeat
Las CIOBBa_I14016 Version 1 (Component)P(Las) CIO
BBa_K729000BBa_K729000 Version 1 (Component)Temperature regulated Gas Vesicle Polycistronic gene cluster composite
BBa_K127013BBa_K127013 Version 1 (Component)gas vesicle protein A from cyanobacteria Anabaena
BBa_J22101BBa_J22101 Version 1 (Component)Lac Y gene
BBa_I13545BBa_I13545 Version 1 (Component)GFP and RFP polycistronic
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
las TetOBBa_I14015 Version 1 (Component)P(Las) TetO
BBa_I15018BBa_I15018 Version 1 (Component)polycistronic ECFP+EYFP under B0031
BBa_I15015BBa_I15015 Version 1 (Component)polycistronic ECFP+EYFP under B0032
lsrRBBa_K091001 Version 1 (Component)LsrR gene
lsrKBBa_K091002 Version 1 (Component)LsrK gene
BBa_K1773003BBa_K1773003 Version 1 (Component)I-F type CRISPR-Cas Cas3 gene
BBa_J33201BBa_J33201 Version 1 (Component)E. coli chromosomal ars promoter with arsR repressor gene
BBa_K117000BBa_K117000 Version 1 (Component)Lysis gene (promotes lysis in colicin-producing bacteria strain)
BBa_J33204BBa_J33204 Version 1 (Component)xylE reporter gene with rbs
ccdBBBa_P1010 Version 1 (Component)ccdB cell death gene
BBa_K809601BBa_K809601 Version 1 (Component)GAL promoter (kozak) without start codon ATG
BBa_K1159300BBa_K1159300 Version 1 (Component)Polioviral Internal Ribosome Entry Site (IRES) for polycistronic expression in eukaryotes
ATF1 generBBa_J45199 Version 1 (Component)Banana odor enzyme (ATF1) generator
BBa_J70029BBa_J70029 Version 1 (Component)RBS + mCherry gene, optimized for expression in Me. florum and E. coli
BBa_I15014BBa_I15014 Version 1 (Component)polycistronic EYFP+ECFP
BBa_K315015BBa_K315015 Version 1 (Component)TetA gene (DeOptimized from bp 1 to 141)
BBa_J13075BBa_J13075 Version 1 (Component)Polycistronic mCherry/YFP
BBa_K525551BBa_K525551 Version 1 (Component)NADP+ Oxidoreductase and polycistronic BisdA and BisdB
BBa_K748002BBa_K748002 Version 1 (Component)Truncated lysostaphin coding sequence. Lysostaphin has has a specific lytic action against S.aureus.
BBa_K1585320BBa_K1585320 Version 1 (Component)GlgAB for polycistronic expression
BBa_I13561BBa_I13561 Version 1 (Component)polycistronic mRFP1 and GFP
BBa_K1585321BBa_K1585321 Version 1 (Component)glgCAB for polycistronic expression of glycogen synthesis genes in E.coli