Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Amp Cas
BBa_I13800 Version 1 (Component)
Ampicillin Resistance Cassette

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_I10043
BBa_I10043 Version 1 (Component)
H. sapiens FAS Receptor

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

BBa_K777000
BBa_K777000 Version 1 (Component)
Tar receptor

Las CIO
BBa_I14016 Version 1 (Component)
P(Las) CIO

tar-envZ
BBa_C0082 Version 1 (Component)
Receptor, tar-envZ

BBa_K209399
BBa_K209399 Version 1 (Component)
AarI A-D acceptor vector

BBa_K1639004
BBa_K1639004 Version 1 (Component)
H-NS

BBa_J120016
BBa_J120016 Version 1 (Component)
Coding sequence for SOX10, a transcriptional regulator in H. sapiens

BBa_J120015
BBa_J120015 Version 1 (Component)
Coding sequence for PAX3, a regulatory transcription factor in H. sapiens

BBa_K575004
BBa_K575004 Version 1 (Component)
Continuous expression of LasR receptor protein (with RBS, B0030)

"H"
BBa_K1080001 Version 1 (Component)
ChlH

BBa_J120000
BBa_J120000 Version 1 (Component)
Coding sequence for PARP1 (poly [ADP-ribose] polymerase 1) H. sapiens

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

las TetO
BBa_I14015 Version 1 (Component)
P(Las) TetO

BBa_J120025
BBa_J120025 Version 1 (Component)
TACE(Tumor necrosis factor-α-converting enzyme) aka ADAM17 endopepsidase (H. sapiens)

BBa_I712020
BBa_I712020 Version 1 (Component)
Homo sapiens caspase 3

BBa_J120001
BBa_J120001 Version 1 (Component)
DFFb (CAD)-coding sequence for H. sapien DNA fragmentation factor beta

BBa_K216003
BBa_K216003 Version 1 (Component)
TNT receptor TNT-R3

virA
BBa_K389010 Version 1 (Component)
VirA receptor (expressed)

BBa_K126001
BBa_K126001 Version 1 (Component)
TE33 Fab H chain

LDHA
BBa_K1154003 Version 1 (Component)
Homo sapiens lactate dehydrogenase A (LDHA)

NPDC-1C3-H
BBa_K590028 Version 1 (Component)
NPDC-PSB1C3-High constitutive

BBa_K1690004
BBa_K1690004 Version 1 (Component)
Pheromone receptor (C. albicans)

BBa_K1690005
BBa_K1690005 Version 1 (Component)
Pheromone receptor (C. parapsilosis)

BBa_K1434000
BBa_K1434000 Version 1 (Component)
cAMP receptor protein (CRP) mutant

BBa_M1655
BBa_M1655 Version 1 (Component)
Homo sapiens keratin 17 (KRT17)

BBa_K1969001
BBa_K1969001 Version 1 (Component)
Homo sapiens adrenoceptor beta 2 (ADRB2)

BBa_K575007
BBa_K575007 Version 1 (Component)
Continous expression of RhlR receptor protein (with RBS, B0034)

BBa_K1742007
BBa_K1742007 Version 1 (Component)
Homo sapiens LTF Lactoferrin

virA
BBa_K389001 Version 1 (Component)
VirA receptor

BBa_K2170051
BBa_K2170051 Version 1 (Component)
Secretory prokaryotic biotin presenting receptor with biotin acceptor peptide

BBa_I716316
BBa_I716316 Version 1 (Component)
H-NOX

mTaz
BBa_K1909002 Version 1 (Component)
mTaz (Taz-derived mDAP receptor)

BBa_K137003
BBa_K137003 Version 1 (Component)
LacY +H Insertion Mutation