SynBioHub

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

ATG
ATG Version 1 (Component)

Public

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Public

HA
BBa_I712008 Version 1 (Component)
HA affinity tag

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RGD-His-St
BBa_K133036 Version 1 (Component)
RGD-His affinity tag-Stop

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His-Stop
BBa_K133133 Version 1 (Component)
His affinity tag-stop

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Scar25 ATG
BBa_K1319106 Version 1 (Component)
RFC 25 Translation Start Scar Sequence

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BBa_J04031
BBa_J04031 Version 1 (Component)
GFP w/LVA tag

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IMPACT
BBa_M0026 Version 1 (Component)
IMPACT affinity tag

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NLS
BBa_J176008 Version 1 (Component)
NLS

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His
BBa_K157011 Version 1 (Component)
His affinity tag; Freiburg standard

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BBa_K105012
BBa_K105012 Version 1 (Component)
10 aa flexible protein domain linker

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PEST
BBa_J176018 Version 1 (Component)
PEST

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linker
BBa_K133132 Version 1 (Component)
8 aa protein domain linker

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BBa_K157012
BBa_K157012 Version 1 (Component)
Strep affinity tag II; Freiburg standard

Public

BBa_K844000
BBa_K844000 Version 1 (Component)
10x-Histidine (10x-His) Tag with double stop codon (TAATAA)

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c-Myc
BBa_I712007 Version 1 (Component)
c-Myc affinity tag

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NLSmycSTOP
BBa_J176031 Version 1 (Component)
NLS myc stop

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BBa_K1150016
BBa_K1150016 Version 1 (Component)
HA tag

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G-His6(N)
BBa_K1362430 Version 1 (Component)
C-terminal His6 (N-Intein)

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3x FLAG
BBa_J64005 Version 1 (Component)
3x FLAG affinity tag

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BBa_K416003
BBa_K416003 Version 1 (Component)
Yeast Secretion Tag

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RBS-GFP-Te
BBa_I763020 Version 1 (Component)
RBS-GFP (+LVA Tag)-Terminators

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T7
BBa_M0028 Version 1 (Component)
T7 affinity tag

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BBa_J70042
BBa_J70042 Version 1 (Component)
6his part for use with BioScaffold parts ATG-6his-GGATCC (glycine serine)

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Biotin
BBa_M0024 Version 1 (Component)
Biotin affinity tag

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FLAG
BBa_M0022 Version 1 (Component)
FLAG affinity tag

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HAT
BBa_M0033 Version 1 (Component)
HAT affinity tag

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His
BBa_K128005 Version 1 (Component)
His affinity tag

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polyA
BBa_J176009 Version 1 (Component)
polyA2

Public

Strep-tag
BBa_M0031 Version 1 (Component)
Strep-tag II affinity tag

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BBa_K1125001
BBa_K1125001 Version 1 (Component)
Tandem Affinity Purification (TAP) tag

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c-Myc
BBa_M0032 Version 1 (Component)
c-Myc affinity tag

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Poly-Arg
BBa_M0030 Version 1 (Component)
Poly-Arginine affinity tag

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S-protein
BBa_M0029 Version 1 (Component)
S-protein affinity tag

Public

//proteintag/affinity
proteintag_affinity Version 1 (Collection)

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BBa_K1583060
BBa_K1583060 Version 1 (Component)
Hydroxyapatite affinity tag

Public

HA
BBa_K128001 Version 1 (Component)
HA affinity tag

Public

FLAG
BBa_K128000 Version 1 (Component)
FLAG affinity tag

Public

BBa_J70044
BBa_J70044 Version 1 (Component)
6his part for use with BioScaffold parts (G)GATCC(glycine serine)-6his-TAA

Public

Met-His
BBa_K133035 Version 1 (Component)
Methionine-His affinity tag

Public

His6
BBa_K1362431 Version 1 (Component)
N-terminal His6 (C-Intein)

Public

His
BBa_M0021 Version 1 (Component)
Poly-His affinity tag

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S
BBa_K112705 Version 1 (Component)
S affinity tag

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His
BBa_K112703 Version 1 (Component)
His affinity tag

Public

His
BBa_I757013 Version 1 (Component)
His affinity tag

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//proteindomain/affinity
proteindomain_affinity Version 1 (Collection)

Public

BBa_J04051
BBa_J04051 Version 1 (Component)
RFP with tag

Public

BBa_K208003
BBa_K208003 Version 1 (Component)
OmpA Signal Peptide - Silver Fusion Compatible

Public

BBa_J70048
BBa_J70048 Version 1 (Component)
6his part for use with BioScaffold parts ATG-GGATCC (glycine serine)-6 His-TAA

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