GAL7GenBank_CP003831_Region_178967_179986 Version 1 (Unknown)Organism: Cryptococcus neoformans var. grubii H99
GAL7GenBank_AE017353_Region_190704_1911746 Version 1 (Unknown)Organism: Cryptococcus neoformans var. neoformans JEC21
GAL1GenBank_CP003831_Region_176110_177085 Version 1 (Unknown)Organism: Cryptococcus neoformans var. grubii H99
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
BBa_J04450BBa_J04450 Version 1 (Component)RFP Coding Device
pBad/araCBBa_I0500 Version 1 (Component)Inducible pBad/araC promoter
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
Amp CasBBa_I13800 Version 1 (Component)Ampicillin Resistance Cassette
GFP reportBBa_E0240 Version 1 (Component)GFP generator
BBa_J04500BBa_J04500 Version 1 (Component)IPTG inducible promoter with RBS
GFP generaBBa_E0840 Version 1 (Component)GFP generator
GAL1BBa_J63006 Version 1 (Component)yeast GAL1 promoter
BBa_K511202BBa_K511202 Version 1 (Component)rtTA-DD Transactivator MammoBlock
BBa_K511915BBa_K511915 Version 1 (Component)Inducible rtTA-DD Transactivator Generator (UAS-Gal4-rtTA-DD) MammoBlock Device
BBa_K511903BBa_K511903 Version 1 (Component)rtTA-DD Transactivator Generator (Hef1a-rtTA-DD) MammoBlock Device
BBa_K511911BBa_K511911 Version 1 (Component)Inducible rtTA Transactivator Generator (TRE-Tight-rtTA3) MammoBlock Device
BBa_K511914BBa_K511914 Version 1 (Component)Inducible rtTA3 Transactivator Generator (UAS-Gal4-rtTA3) MammoBlock Device
BBa_K511203BBa_K511203 Version 1 (Component)rtTA3 Tetracycline-Inducible Transactivator MammoBlock
BBa_K511003BBa_K511003 Version 1 (Component)UAS-Gal4 Promoter MammoBlock
LuxRBBa_I0462 Version 1 (Component)luxR Protein Generator
BBa_K511902BBa_K511902 Version 1 (Component)rtTA3 Transactivator Generator (Hef1a-rtTA3) MammoBlock Device
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_J09855BBa_J09855 Version 1 (Component)Constitutive luxR device with pLuxR
BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
BBa_K511207BBa_K511207 Version 1 (Component)Gal4-VP16 Transactivator MammoBlock
BBa_J13002BBa_J13002 Version 1 (Component)TetR repressed POPS/RIPS generator
BBa_K511908BBa_K511908 Version 1 (Component)Inducible Gal4-VP16 Transactivator Generator (TRE-Tight-Gal4-VP16) MammoBlock Device
BBa_K779305BBa_K779305 Version 1 (Component)rtTA3 MammoBlock
BBa_K511900BBa_K511900 Version 1 (Component)Gal4-VP16 Transactivator Generator (Hef1a-Gal4-VP16) MammoBlock Device
AraBBa_K808000 Version 1 (Component)araC-Pbad - Arabinose inducible regulatory promoter/repressor unit
BBa_K779604BBa_K779604 Version 1 (Component)Hef1a-rTTA3 MammoBlock Device
BBa_K511912BBa_K511912 Version 1 (Component)Inducible LacI Repressor Generator (UAS-Gal4-LacI) MammoBlock Device
BBa_K511825BBa_K511825 Version 1 (Component)Inducible Notch-Gal4-ESN Receptor Generator (UAS-Gal4-Notch-Gal4-ESN) MammoBlock Device
BBa_K511819BBa_K511819 Version 1 (Component)Inducible Yellow Fluorescent Protein Generator (UAS-Gal4-Citrine) MammoBlock Device
BBa_K511821BBa_K511821 Version 1 (Component)Inducible Fluorescence/Repression Generator (UAS-Gal4-amCyan-miRFF4) MammoBlock Device
BBa_K511820BBa_K511820 Version 1 (Component)Inducible Blue Fluorescent Protein Generator (UAS-Gal4-EBFP2) MammoBlock Device
BBa_K511823BBa_K511823 Version 1 (Component)Inducible Red Fluorescent Protein Generator (UAS-Gal4-mKate) MammoBlock Device
BBa_K511913BBa_K511913 Version 1 (Component)Inducible LacI Repressor Generator (UAS-Gal4-LacI-KRAB) MammoBlock Device
BBa_K081014BBa_K081014 Version 1 (Component)RFP protein generator - PoPS->RFP