SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

tetR
BBa_C0040 Version 1 (Component)
tetracycline repressor from transposon Tn10 (+LVA)

lacI
BBa_C0012 Version 1 (Component)
lacI repressor from E. coli (+LVA)

cI lam
BBa_C0051 Version 1 (Component)
cI repressor from E. coli phage lambda (+LVA)

luxr
BBa_C0062 Version 1 (Component)
luxR repressor/activator, (no LVA?)

BBa_J04450
BBa_J04450 Version 1 (Component)
RFP Coding Device

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

GFP report
BBa_E0240 Version 1 (Component)
GFP generator

BBa_K611078
BBa_K611078 Version 1 (Component)
LVA 5' -11bp, Barcode 3' -16bp Truncation (BBa_K611101) test construct

YFP
BBa_E0032 Version 1 (Component)
enhanced yellow fluorescent protein derived from A. victoria GFP

SEGA021
SEGA021 Version 1 (Component)
natural linear DNA.

SEGA022
SEGA022 Version 1 (Component)
natural linear DNA.

BBa_K511102
BBa_K511102 Version 1 (Component)
mKate MammoBlock

BBa_I13401
BBa_I13401 Version 1 (Component)
GFP reporter for RHS of library test constructs

BBa_K215101
BBa_K215101 Version 1 (Component)
prtE from erwinia chrysanthemi

BBa_K511101
BBa_K511101 Version 1 (Component)
EYFP-FF4x4 MammoBlock

BBa_K314101
BBa_K314101 Version 1 (Component)
Low constitutive expression cassette

cI 434
BBa_C0052 Version 1 (Component)
cI repressor from phage 434 (+LVA)

BBa_K611079
BBa_K611079 Version 1 (Component)
LVA 5' -22bp, Barcode 3' -16bp Truncation (BBa_K611102) test construct

BBa_K411105
BBa_K411105 Version 1 (Component)
eIF4A binding aptamer

BBa_K511100
BBa_K511100 Version 1 (Component)
EBFP2 MammoBlock

GeA
BBa_K411101 Version 1 (Component)
GFP_split_A + Linker + eIF4A_split_A

BBa_K611101
BBa_K611101 Version 1 (Component)
Truncated LVA (5' -11bp) Tag with Double Stop Codon and Truncated Barcode (3' -16bp)

GFP genera
BBa_E0840 Version 1 (Component)
GFP generator

lasr
BBa_C0079 Version 1 (Component)
lasR activator from P. aeruginosa PAO1(+LVA)

BBa_K611075
BBa_K611075 Version 1 (Component)
Barcode 3' -16bp Truncation (BBa_K611098) test construct

BBa_E0430
BBa_E0430 Version 1 (Component)
EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)

CFP
BBa_K411201 Version 1 (Component)
Cyan Fluorescent Protein (CFP)

BBa_K611076
BBa_K611076 Version 1 (Component)
LVA 5' -11bp, Barcode 3' -8bp Truncation (BBa_K611099) test construct

BBa_K611100
BBa_K611100 Version 1 (Component)
Truncated LVA (5' -22bp) Tag with Double Stop Codon and Truncated Barcode (3' -8bp)

BBa_K611103
BBa_K611103 Version 1 (Component)
LVA tag, Double Stop Codon, Barcode

BBa_K611102
BBa_K611102 Version 1 (Component)
Truncated LVA (5' -22bp) Tag with Double Stop Codon and Truncated Barcode (3' -16bp)

ReB
BBa_K411104 Version 1 (Component)
RFP_split_B + Linker + eIF4A_split_B

luxI
BBa_C0161 Version 1 (Component)
autoinducer synthetase for AHL (no LVA)

BBa_K2151101
BBa_K2151101 Version 1 (Component)
Zeta with native RBS

BBa_K611072
BBa_K611072 Version 1 (Component)
LVA 5' -11bp Truncation (BBa_K611095) test construct

BBa_K411001
BBa_K411001 Version 1 (Component)
Theophylline-inducible Riboswitch

c2 P22
BBa_C0053 Version 1 (Component)
c2 repressor from Salmonella phage P22 (+LVA)

BBa_K1114101
BBa_K1114101 Version 1 (Component)
MoClo format of a modified version of BBa_B0031 with BC fusion sites.

GeB
BBa_K411102 Version 1 (Component)
GFP_split_B + Linker + eIF4A_split_B

ReA
BBa_K411103 Version 1 (Component)
RFP_split_A + Linker + eIF4A_split_A

eIF4A
BBa_K411100 Version 1 (Component)
Eukaryote Initiation Factor 4A (eIF4A) from Mus Musculus

BBa_K511001
BBa_K511001 Version 1 (Component)
minCMV-1xCI434 Promoter MammoBlock

BBa_K511201
BBa_K511201 Version 1 (Component)
Mnt-VP16 Transactivator MammoBlock

BBa_J04031
BBa_J04031 Version 1 (Component)
GFP w/LVA tag

eyfp
BBa_E0031 Version 1 (Component)
EYFP (RBS+ LVA-)

BBa_K611077
BBa_K611077 Version 1 (Component)
LVA 5' -22bp, Barcode 3' -8bp Truncation (BBa_K611100) test construct

BBa_K511103
BBa_K511103 Version 1 (Component)
amCyan-miRFF4 MammoBlock