Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
LacIBBa_R0010 Version 1 (Component)promoter (lacI regulated)
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
lacIBBa_C0012 Version 1 (Component)lacI repressor from E. coli (+LVA)
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
lacI+pLBBa_R0011 Version 1 (Component)Promoter (lacI regulated, lambda pL hybrid)
BBa_J61101BBa_J61101 Version 1 (Component)Ribosome Binding Site Family Member
P(Lac) IQBBa_I14032 Version 1 (Component)promoter P(Lac) IQ
BBa_J61120BBa_J61120 Version 1 (Component)Ribosome Binding Site Family Member
LacILacI Version 1 (Component) cI lamBBa_C0051 Version 1 (Component)cI repressor from E. coli phage lambda (+LVA)
Amp CasBBa_I13800 Version 1 (Component)Ampicillin Resistance Cassette
cI lamBBa_R0051 Version 1 (Component)promoter (lambda cI regulated)
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_J61100BBa_J61100 Version 1 (Component)Ribosome Binding Site Family Member
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
PBS_F24PBS_F24 Version 1 (Component) BBa_J33207BBa_J33207 Version 1 (Component)lac promoter and lacZ
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
BBa_J85600BBa_J85600 Version 1 (Component)attB1 recombination site
lacZ-alphaBBa_I732006 Version 1 (Component)lacZ alpha fragment
BBa_K1585999BBa_K1585999 Version 1 (Component)lacI binding site
BBa_K314103BBa_K314103 Version 1 (Component)Lac induced expression cassette
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
CatBBa_I14033 Version 1 (Component)P(Cat)
RBS-spoVGBBa_K143021 Version 1 (Component)SpoVG ribosome binding site (RBS) for B. subtilis
lacIBBa_Q04121 Version 1 (Component)QPI (B0034.C0012.B0015.R0011)
BBa_K864400BBa_K864400 Version 1 (Component)Ptac, trp & lac regulated promoter
LacIBBa_I732100 Version 1 (Component)LacI
LacOp DelBBa_M36137 Version 1 (Component)Lac Operon deleted CAP binding site
BBa_J61127BBa_J61127 Version 1 (Component)Ribosome Binding Site Family Member
BBa_J61107BBa_J61107 Version 1 (Component)Ribosome Binding Site Family Member
LacZBBa_I732005 Version 1 (Component)lacZ (encoding beta-galactosidase, full-length)
LacYBBa_K137001 Version 1 (Component)LacY
BBa_K731500BBa_K731500 Version 1 (Component)[LacI + LacIq promoter] reverse + [tac promoter + lac operator] forward
BBa_M36138BBa_M36138 Version 1 (Component)Lac Operon modified CAP binding site
BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
BBa_K2066545BBa_K2066545 Version 1 (Component)Synthetic Enhancer Project: LacI binding site (LacO)
BBa_P0412BBa_P0412 Version 1 (Component)PoPS -> LacI [S0150]
cI lamBBa_R1051 Version 1 (Component)Promoter, Standard (lambda cI regulated)<br>
pLacBBa_K1638000 Version 1 (Component)Lac operator
RBS_cassetteRBS_cassette Version 1 (Component)AvrII restriction site (cctagg), overlapped with RBS (aggagga)
VRBBa_G00102 Version 1 (Component)Reverse BioBrick primer annealing site (VR binding site)