Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

pSB1C3
pSB1C3 Version 1 (Component)
High copy BioBrick assembly plasmid

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_J64101
BBa_J64101 Version 1 (Component)
ColE1 biobrick plasmid with backward terminator

pSB1AT3
pSB1AT3 Version 1 (Component)
High copy BioBrick assembly plasmid

BBa_J64100
BBa_J64100 Version 1 (Component)
Medium copy ColE1 BioBrick vector

pSB3K3
pSB3K3 Version 1 (Component)
Low to medium copy BioBrick standard vector

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

K592200
BBa_K592200 Version 1 (Component)
Low to medium copy BioBrick standard vector

pSB3T5
pSB3T5 Version 1 (Component)
Low to medium copy BioBrick standard vector

pSB3K5
pSB3K5 Version 1 (Component)
Low to medium copy BioBrick standard vector

pSB3C5
pSB3C5 Version 1 (Component)
Low to medium copy BioBrick standard vector

BBa_K864004
BBa_K864004 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864006
BBa_K864006 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864005
BBa_K864005 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864000
BBa_K864000 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864002
BBa_K864002 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864007
BBa_K864007 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864003
BBa_K864003 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864001
BBa_K864001 Version 1 (Component)
Low copy BioBrick standard vector

cI lam
BBa_R1051 Version 1 (Component)
Promoter, Standard (lambda cI regulated)<br>

lox
BBa_J61046 Version 1 (Component)
[Lox] site for recombination

BBa_K864014
BBa_K864014 Version 1 (Component)
Low copy BioBrick standard vector with LacI

BBa_K864011
BBa_K864011 Version 1 (Component)
Low copy BioBrick standard vector with LacI

pSB8A15FRT
BBa_K864020 Version 1 (Component)
Low copy BioBrick temperature sensitive standard vector

BBa_K864012
BBa_K864012 Version 1 (Component)
Low copy BioBrick standard vector with LacI

BBa_K864015
BBa_K864015 Version 1 (Component)
Low copy BioBrick standard vector with LacI

BBa_K864009
BBa_K864009 Version 1 (Component)
Low copy BioBrick standard vector with LacI

pSB8A15
BBa_K864016 Version 1 (Component)
Low copy BioBrick temperature sensitive standard vector

BBa_K864013
BBa_K864013 Version 1 (Component)
Low copy BioBrick standard vector with LacI

BBa_K864010
BBa_K864010 Version 1 (Component)
Low copy BioBrick standard vector with LacI

pSB8C15
BBa_K864017 Version 1 (Component)
Low copy BioBrick temperature sensitive standard vector

pSB8C15FRT
BBa_K864021 Version 1 (Component)
Low copy BioBrick temperature sensitive standard vector

pSB8K15
BBa_K864018 Version 1 (Component)
Low copy BioBrick temperature sensitive standard vector

pSB8K15FRT
BBa_K864022 Version 1 (Component)
Low copy BioBrick temperature sensitive standard vector

BBa_K864008
BBa_K864008 Version 1 (Component)
Low copy BioBrick standard vector with LacI