Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

lux pR
BBa_R0062 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pR)

luxr
BBa_C0062 Version 1 (Component)
luxR repressor/activator, (no LVA?)

luxI
BBa_C0061 Version 1 (Component)
autoinducer synthetase for AHL

cI lam
BBa_C0051 Version 1 (Component)
cI repressor from E. coli phage lambda (+LVA)

cI+luxR
BBa_R0065 Version 1 (Component)
Promoter (lambda cI and luxR regulated -- hybrid)

cI lam
BBa_R0051 Version 1 (Component)
promoter (lambda cI regulated)

lux pL
BBa_R0063 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pL)<br>

luxI
BBa_C0161 Version 1 (Component)
autoinducer synthetase for AHL (no LVA)

LuxR
BBa_I0462 Version 1 (Component)
luxR Protein Generator

BBa_C0261
BBa_C0261 Version 1 (Component)
AHL-making Enzyme, luxI (+RBS)

BBa_K546000
BBa_K546000 Version 1 (Component)
Lux pL controlled LuxR with lux pR autoinducing LuxI(lva tag)- AHL.

cII p22
BBa_R0053 Version 1 (Component)
Promoter (p22 cII regulated)

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_I13977
BBa_I13977 Version 1 (Component)
intermediate for lac relaxation oscillator

cI 434
BBa_C0052 Version 1 (Component)
cI repressor from phage 434 (+LVA)

BBa_I13210
BBa_I13210 Version 1 (Component)
Lux/Cin Relaxation Oscillator

lux pR
BBa_R1062 Version 1 (Component)
Promoter, Standard (luxR and HSL regulated -- lux pR)<br>

lox
BBa_J61046 Version 1 (Component)
[Lox] site for recombination

BBa_J09855
BBa_J09855 Version 1 (Component)
Constitutive luxR device with pLuxR

hixC
BBa_J44000 Version 1 (Component)
hixC binding site for Salmonella typhimurium Hin recombinase

cinr
BBa_C0077 Version 1 (Component)
cinR activator from Rhizobium leguminosarum (+LVA)

pLux/Tet
BBa_K176000 Version 1 (Component)
pLux/Tet Hybrid Promoter: (LuxR+,TetR-)->PoPS

BBa_K176028
BBa_K176028 Version 1 (Component)
TetR repressible AHL->PoPS Receiver (Very High LuxR): pCon 0.70->luxR+pLux/Tet->PoPS

BBa_I13976
BBa_I13976 Version 1 (Component)
intermediate for lac relaxation oscillator

cinR
BBa_R0078 Version 1 (Component)
Promoter (cinR and HSL regulated)

BBa_K546003
BBa_K546003 Version 1 (Component)
Lux pL controlled LuxR + lux pR promoter.

BBa_I13908
BBa_I13908 Version 1 (Component)
Synchronized Relaxation Oscillator

BBa_K116641
BBa_K116641 Version 1 (Component)
Reloxilator (Relaxation Oscillator)

cinR
BBa_R0077 Version 1 (Component)
Promoter (cinR and HSL regulated, RBS+)

BBa_I13906
BBa_I13906 Version 1 (Component)
Synchronized Relaxation Oscillator

BBa_I12018
BBa_I12018 Version 1 (Component)
Barkai-Leibler Relaxation Oscillator

cinI
BBa_C0076 Version 1 (Component)
autoinducer synthetase

cI 434
BBa_R0052 Version 1 (Component)
Promoter (434 cI regulated)

BBa_I13950
BBa_I13950 Version 1 (Component)
Exogenous LuxI Relaxation Oscillator Test Construct (I13940.I13941)

BBa_K228011
BBa_K228011 Version 1 (Component)
LuxR-LuxP-SupD

luxR
BBa_R0061 Version 1 (Component)
Promoter (HSL-mediated luxR repressor)

cI lam
BBa_R1051 Version 1 (Component)
Promoter, Standard (lambda cI regulated)<br>

BBa_I13940
BBa_I13940 Version 1 (Component)
Exogenous LuxI Relaxation Oscillator Test Construct Intermediate (I0500.C0261.E0434)

BBa_I13941
BBa_I13941 Version 1 (Component)
Exogenous LuxI Relaxation Oscillator Test Construct Intermediate (R0062.C0260.E0424)

BBa_K091146
BBa_K091146 Version 1 (Component)
pLas/Lux Hybrid Promoter

CII
BBa_K116602 Version 1 (Component)
CII coding region from &#955; phage

Las CIO
BBa_I14016 Version 1 (Component)
P(Las) CIO

BBa_I13209
BBa_I13209 Version 1 (Component)
Relaxation Oscillator Test Construct (I13202.B0015.I0460)

cI HK022
BBa_C0050 Version 1 (Component)
cI repressor from phage HK022 (+LVA?)

luc
BBa_K389004 Version 1 (Component)
Luciferase from pGL4.10[luc2]

Hin
BBa_J31000 Version 1 (Component)
DNA-invertase Hin from Salmonella typhimurium