Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
rrnOrrnO_ter Version (Component) BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
TerTer Version (Component) BBa_K1460004BBa_K1460004 Version 1 (Component)Anderson Promoter + MerT + MerP + ter
BBa_K1420004BBa_K1420004 Version 1 (Component)merR family transcriptional regulator, regulatory protein for mer operon
BBa_K322123BBa_K322123 Version 1 (Component)Phycobilin synthesis operon without terminator
BBa_I746104BBa_I746104 Version 1 (Component)P2 promoter in agr operon from S. aureus
BBa_K2123203BBa_K2123203 Version 1 (Component)Mer Operon Device
BBa_J24807BBa_J24807 Version 1 (Component)hypothetical activator/repressor of Mer operon
BBa_K2123202BBa_K2123202 Version 1 (Component)MerT + MerP (Hg transporters) + MerB (Organomercurial Lyase) + MerA (Mercuric Reductase) + B0015
Operon2BBa_K808007 Version 1 (Component)putative terephtalate uptake operon2
BBa_K1420000BBa_K1420000 Version 1 (Component)Mer operon, biological system found to detoxify organic and inorganic forms of mercury
rrnBrrnB_T1_ter Version (Component) BBa_K1460007BBa_K1460007 Version 1 (Component)Anderson Promoter + merT + merP + Ter + pT7 + GST-CRS5 + Ter
BBa_K909000BBa_K909000 Version 1 (Component)Phycocyanobilin synthesis operon
BBa_K2123108BBa_K2123108 Version 1 (Component)Improved Mer Operon Device with novel regulated promoter
BBa_K1499000BBa_K1499000 Version 1 (Component)wssF gene from wss operon
BBa_K2123110BBa_K2123110 Version 1 (Component)Improved Mer Operon Device with novel regulated exponential promoter
hycApBBa_K778000 Version 1 (Component)hycAp: Promoter of hyc operon activated by FhlA
BBa_K346001BBa_K346001 Version 1 (Component)RBS (B0034) + MerR (mercury-responsive transcription factor)
PrFeBBa_J3902 Version 1 (Component)PrFe (PI + PII rus operon)
BBa_K624001BBa_K624001 Version 1 (Component)tetR+RBS+GFP+ter
BBa_K769020BBa_K769020 Version 1 (Component)lux operon(K769011) + lumP(K769019)
BBa_K769022BBa_K769022 Version 1 (Component)lux operon(K769011) + GFP(I13522)
BBa_K1795024BBa_K1795024 Version 1 (Component)KanR Operon under R0010
BBa_K729003BBa_K729003 Version 1 (Component)csgBAEFG operon
BBa_K822000BBa_K822000 Version 1 (Component)lldPRD operon promoter + RBS from E. coli
BBa_K804005BBa_K804005 Version 1 (Component)DszC coding gene (from DszABC operon)
BBa_K1897037BBa_K1897037 Version 1 (Component)Modified lldPRD operon promoter
BBa_K325909BBa_K325909 Version 1 (Component)Lux Operon (under pBAD)<BR><i>Vibrio Fischeri</i>
BBa_K1497007BBa_K1497007 Version 1 (Component)Naringenin producing operon
BBa_K165000BBa_K165000 Version 1 (Component)MET 25 Promoter
ShortLinkeBBa_K243004 Version 1 (Component)Short Linker (Gly-Gly-Ser-Gly)
BBa_K769011BBa_K769011 Version 1 (Component)Promoter(Pbad)-RBS-lux operon-DT
BBa_K1471007BBa_K1471007 Version 1 (Component)RBS - MerB - RBS - MerE.
BBa_K902024BBa_K902024 Version 1 (Component)moa Operon (MoaABCDE)
BBa_K223051BBa_K223051 Version 1 (Component)5MT operon (promoter-operator)