Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
mRFP1BBa_E1010 Version 1 (Component)**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
BBa_C2007BBa_C2007 Version 1 (Component)Zif268-GCN4.MalE
BBa_J56012BBa_J56012 Version 1 (Component)Invertible sequence of dna includes Ptrc promoter
BBa_C20091BBa_C20091 Version 1 (Component)MalE (deletion of Zif268.GCN4)
BBa_P2007BBa_P2007 Version 1 (Component)PoPS->Zif268-GCN4.MalE
pSC101BBa_I50041 Version 1 (Component)pSC101 origin of replication, reverse
BBa_P2107BBa_P2107 Version 1 (Component)Zif268-GCN4.MalE protein generator
BBa_C2006BBa_C2006 Version 1 (Component)MalE.FactorXa.Zif268-GCN4
BBa_K165006BBa_K165006 Version 1 (Component)Zif268-HIV DNA-binding domain
zif23BBa_C2001 Version 1 (Component)Zif23-GCN4 engineered repressor (+LVA, C2000 codon-optimized for E.coli)
Zif23BBa_R2000 Version 1 (Component)Promoter, Zif23 regulated, test: between
BBa_P2005BBa_P2005 Version 1 (Component)Zif268-GCN4 protein generator
LacIBBa_K143033 Version 1 (Component)LacI (Lva<sup>-</sup>, N-terminal deletion) regulatory protein
BBa_B0029BBa_B0029 Version 1 (Component)1 bp deletion from B0031
BBa_P2105BBa_P2105 Version 1 (Component)Zif268-GCN4 protein generator
BBa_K165011BBa_K165011 Version 1 (Component)Zif268-HIV binding sites (3)
BBa_P20020BBa_P20020 Version 1 (Component)Constitutive expression of Zif23-GCN4
BBa_P2002BBa_P2002 Version 1 (Component)PoPS->Zif23-GCN4
BBa_M1016BBa_M1016 Version 1 (Component)PhaB with zif23-GCN4
BBa_M1019BBa_M1019 Version 1 (Component)Silver Fusion Compatible PhaB gene with zif23-GCN4
RFC 37BBa_K245127 Version 1 (Component)GCN
BBa_M1018BBa_M1018 Version 1 (Component)PhaB with zif23-GCN4
BBa_I13401BBa_I13401 Version 1 (Component)GFP reporter for RHS of library test constructs
zif23BBa_C2000 Version 1 (Component)Repressor, Zif23-GCN4 (RBS-, LVA+)
lacZ aBBa_E0033 Version 1 (Component)LacZ alpha fragment; complements matching N-terminal deletion mutant (lacZ-omega)
Zif23BBa_R2002 Version 1 (Component)Promoter, Zif23 regulated, test: between and after
BBa_K880005BBa_K880005 Version 1 (Component)Strong promoter, strong RBS combination for high expression levels of proteins
RFP2BBa_I715023 Version 1 (Component)Carboxyl portion of RFP
BBa_K323105BBa_K323105 Version 1 (Component)Zif268 zinc finger + linker
mRFP sel.BBa_K1362422 Version 1 (Component)mRFP selection marker with outward BsaI restriction sites
BBa_I714031BBa_I714031 Version 1 (Component)OriT-R (Origin of Transfer for the R751-plasmid nic region)