Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

pSB1C3
pSB1C3 Version 1 (Component)
High copy BioBrick assembly plasmid

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

pTG262-BB
BBa_I742123 Version 1 (Component)
Multi-host vector pTG262 converted to BioBrick vector

BBa_P10598
BBa_P10598 Version 1 (Component)
GoldenBraid destination vector omega insert

BBa_P10599
BBa_P10599 Version 1 (Component)
GoldenBraid destination vector alpha insert

BBa_K1321338
BBa_K1321338 Version 1 (Component)
T7 Expression vector

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_J64101
BBa_J64101 Version 1 (Component)
ColE1 biobrick plasmid with backward terminator

pSB1AT3
pSB1AT3 Version 1 (Component)
High copy BioBrick assembly plasmid

BBa_J61002
BBa_J61002 Version 1 (Component)
EX-Ptet-S-rbsRFP-P "RFP reporter"

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K541915
BBa_K541915 Version 1 (Component)
Multi-host vector pTG262 converted to BioBrick vector wtih LALF protein and SacB signal peptide

BBa_K541925
BBa_K541925 Version 1 (Component)
Multi-host vector pTG262 converted to BioBrick vector wtih LALF protein and LipA signal peptide

BBa_K209399
BBa_K209399 Version 1 (Component)
AarI A-D acceptor vector

BBa_J64100
BBa_J64100 Version 1 (Component)
Medium copy ColE1 BioBrick vector

pSB4C1
pSB4C1 Version 1 (Component)
pCK01 converted into BioBrick vector (formerly BBa_I739202)

pSB1A2
pSB1A2 Version 1 (Component)
pSB1A2 (Replaced by pSB1A3)

pSB6A1
pSB6A1 Version 1 (Component)
pBR322 converted to BioBrick vector (formally BBa_I739201)

BBa_I13452
BBa_I13452 Version 1 (Component)
Adds another BioBrick site

BBa_K415508
BBa_K415508 Version 1 (Component)
phEF1a L4R1 MammoBlock Entry Vector

pSB3K1
pSB3K1 Version 1 (Component)
pACYC177 converted into BioBrick vector (formerly BBa_I739202)

BB base ve
BBa_I51020 Version 1 (Component)
BioBrick base vector (for constructing pSB**5 vectors)

pSB3K3
pSB3K3 Version 1 (Component)
Low to medium copy BioBrick standard vector

BBa_K1321300
BBa_K1321300 Version 1 (Component)
pSEVA331-Bb - pSEVA331 with biobrick prefix and suffix

BBa_M12068
BBa_M12068 Version 1 (Component)
BioBrick-Compatible Broad-Host-Range Vector pPMQAK1

K592200
BBa_K592200 Version 1 (Component)
Low to medium copy BioBrick standard vector

pTG262
BBa_I742103 Version 1 (Component)
pTG262 Plasmid (Gram negative to Gram positive shuttle vector)

BBa_J61016
BBa_J61016 Version 1 (Component)
Biobrick converter for BamHI-part-EcoRI

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

BBa_K864004
BBa_K864004 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864006
BBa_K864006 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864005
BBa_K864005 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864000
BBa_K864000 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864002
BBa_K864002 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864007
BBa_K864007 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864003
BBa_K864003 Version 1 (Component)
Low copy BioBrick standard vector

BBa_K864001
BBa_K864001 Version 1 (Component)
Low copy BioBrick standard vector