iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
BBa_K309020BBa_K309020 Version 1 (Component)eCFP (for use in C. elegans chassis)
BBa_K309012BBa_K309012 Version 1 (Component)Unc-54 3' UTR (for use in C. elegans chassis)
BBa_K631009BBa_K631009 Version 1 (Component)OX1R (GPCR; for use in C. elegans)
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
tetA(C)fBBa_J31007 Version 1 (Component)tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_K631006BBa_K631006 Version 1 (Component)NPY1R_Rat (GPCR, for use in C. elegans)
BBa_K631007BBa_K631007 Version 1 (Component)ADBR2 (GPCR; for use in C. elegans)
FurBO_11498 Version 1 (Component) hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_K631003BBa_K631003 Version 1 (Component)GPC-1 (promoter; for use in C. elegans)
BBa_K631001BBa_K631001 Version 1 (Component)ODR-7 (promoter; for use in C. elegans)
BBa_K631010BBa_K631010 Version 1 (Component)MARM (GPCR; for use in C. elegans)
BBa_K631008BBa_K631008 Version 1 (Component)MAM1R (GPCR, for use in C. elegans)
BBa_K631005BBa_K631005 Version 1 (Component)NPY1R_Mus (GPCR, for use in C. elegans)
tetA(C)bBBa_J31006 Version 1 (Component)tetracycline resistance protein TetA(C) (backwards) [cf. BBa_J31007]
BBa_K309018BBa_K309018 Version 1 (Component)eYFP (for use in C. elegans chassis)
BBa_K631002BBa_K631002 Version 1 (Component)let-858 (promoter; for use in C. elegans)
BBa_I13458BBa_I13458 Version 1 (Component)promoter C and arabinose C operon
BBa_K631035BBa_K631035 Version 1 (Component)Str2 (Promoter; for use in C. elegans)
BBa_K631004BBa_K631004 Version 1 (Component)GCY7 (promoter, for use in C. elegans)
BBa_K309005BBa_K309005 Version 1 (Component)mCherry (for use in C. elegans chassis)
BBa_K309013BBa_K309013 Version 1 (Component)pOsm-10 (for use in C. elegans)
BBa_K309016BBa_K309016 Version 1 (Component)eGFP (for use in C. elegans chassis)
BBa_K309019BBa_K309019 Version 1 (Component)NPHR (for use in C. elegans)
BBa_K631037BBa_K631037 Version 1 (Component)GPC-1:eCFP:UNC-54 (for use in C. elegans)
BBa_K309009BBa_K309009 Version 1 (Component)pOdr-10 (for use in C. elegans chassis)
BBa_K309014BBa_K309014 Version 1 (Component)pOdr-1 (for use in C. elegans chassis)
BBa_K309017BBa_K309017 Version 1 (Component)pStr-220 (for use in C. elegans chassis)
BBa_K309011BBa_K309011 Version 1 (Component)pHsp-3 (for use in C. elegans chassis)
BBa_K309004BBa_K309004 Version 1 (Component)ChR2::eYFP (for use in C. elegans chassis)
BBa_K309007BBa_K309007 Version 1 (Component)ChR-2 (for use in the C. elegans chassis)
BBa_K631013BBa_K631013 Version 1 (Component)RFP (Fluorescent protein; for use in C. elegans)
BBa_K631016BBa_K631016 Version 1 (Component)ODR7:OX1R:UNC-54 (for use in C. elegans)
BBa_K631017BBa_K631017 Version 1 (Component)ODR7:OX1R:UNC-54 (for use in C. elegans)
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)