ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
BBa_K1231000BBa_K1231000 Version 1 (Component)The asr promoter is a pH-responsive promoter.
BBa_K1799016BBa_K1799016 Version 1 (Component)NsrR open reading frame
M-BBBa_K774001 Version 1 (Component)Mammalian-Bacterial Promoter: E9-ns2 CArG promoter sequence + BHN + BBaK216005
BBa_K125100BBa_K125100 Version 1 (Component)nir promoter from <I>Synechocystis</I> sp. PCC6803
B-MBBa_K774000 Version 1 (Component)Bacterial-Mammalian Promoter: BBaK216005 + BHN + CArG promoter sequence E9-ns2
NOR2BBa_I732352 Version 1 (Component)NOR Candidate (U035O44D001O22)
BBa_K1898200BBa_K1898200 Version 1 (Component)GSR, glutathione reductase
NsrRBO_11309 Version 1 (Component) NOR1BBa_I732351 Version 1 (Component)NOR Candidate (U037O11D002O22)
ansRBO_31744 Version 1 (Component) AnsRBO_10829 Version 1 (Component) DsrBBa_K896002 Version 1 (Component)Dsr (sulfite reductase)
tsr-cwBBa_J29046 Version 1 (Component)tsr-cw(tumble)
BBa_M33001BBa_M33001 Version 1 (Component)Nar operon promoter (narGp) => PoPs
T7RSRBBa_K786031 Version 1 (Component)T7promoter-RSR-T7teminator
Ec86 msr/mBBa_I715072 Version 1 (Component)Ec86 msr/msd
BBa_J29047BBa_J29047 Version 1 (Component)tsr-ccw(run)
BBa_K091172BBa_K091172 Version 1 (Component)lsr system supporting genes
Ec83 msr/mBBa_I715073 Version 1 (Component)Ec83 msr/msd region
BBa_K248001BBa_K248001 Version 1 (Component)nsrR (nitrite-sensitive transcription repressor)
N2C2BBa_I744213 Version 1 (Component)LuxN-Tsr Chimeric Receptor D