SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

BBa_J61101
BBa_J61101 Version 1 (Component)
Ribosome Binding Site Family Member

OmpR
BBa_R0082 Version 1 (Component)
Promoter (OmpR, positive)

hixC
BBa_J44000 Version 1 (Component)
hixC binding site for Salmonella typhimurium Hin recombinase

BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_I712015
BBa_I712015 Version 1 (Component)
HIV-1 protease cleavage site

BBa_J61120
BBa_J61120 Version 1 (Component)
Ribosome Binding Site Family Member

BBa_B0033
BBa_B0033 Version 1 (Component)
RBS.4 (weaker) -- derivative of BBa_0030

BBa_J15001
BBa_J15001 Version 1 (Component)
strong synthetic E. coli ribosome binding site with SacI site.

BBa_J61100
BBa_J61100 Version 1 (Component)
Ribosome Binding Site Family Member

preSCsite
BBa_J18919 Version 1 (Component)
preScission protease cleavage site (E. coli-optimized)

OmpR
BBa_R0084 Version 1 (Component)
Promoter (OmpR, positive)

BBa_J85600
BBa_J85600 Version 1 (Component)
attB1 recombination site

OmpA
BBa_K103006 Version 1 (Component)
OmpA outer membrane protein A fused to linker; displays proteins on cell surface

OmpA-HIVcl
BBa_K743011 Version 1 (Component)
OmpA + HIV protease cleavage site secretion system

OmpA + HIV
BBa_K743012 Version 1 (Component)
OmpA + HIV protease cleavage site - GFP secretion system

OmpR
BBa_R0083 Version 1 (Component)
Promoter (OmpR, positive)

TEV clv.
BBa_K1362453 Version 1 (Component)
TEV protease recognition/cleavage site

BBa_K533002
BBa_K533002 Version 1 (Component)
OmpA-HIV protease site-SH3

BBa_K1123012
BBa_K1123012 Version 1 (Component)
His-Tag and Thrombine Cleavage Site

BBa_K1680012
BBa_K1680012 Version 1 (Component)
Cleavage site for HCV protease

BBa_K533003
BBa_K533003 Version 1 (Component)
OmpA-HIV aspartyl protease

BBa_I712034
BBa_I712034 Version 1 (Component)
CMVp - myristoilation site - HIV protease cleavage site

BBa_I712016
BBa_I712016 Version 1 (Component)
myristoilation signal sequence fused to Tobacco Etch Virus (TEV) protease cleavage site

TEV clv.
BBa_K1362452 Version 1 (Component)
TEV protease recognition/cleavage site

RE
BBa_J3101 Version 1 (Component)
Recombinational Enhancer (RE) for Hin/Hix inverting

BBa_K533011
BBa_K533011 Version 1 (Component)
OmpA-HIV protease site-SH3 expression cassette

BBa_K648008
BBa_K648008 Version 1 (Component)
TEV protease cleaveage site with Standard 25 Prefix/Suffix

BBa_I712045
BBa_I712045 Version 1 (Component)
CMVp - myristoilation site - HIV protease cleavage site - GFP

BBa_K1319016
BBa_K1319016 Version 1 (Component)
TEV protease cleavage site

BBa_I712041
BBa_I712041 Version 1 (Component)
CMVp - CD4 - HIV protease cleavage site - mCherryNLS

BBa_K1166002
BBa_K1166002 Version 1 (Component)
HlyA-tag+Secretion system

RBS_cassette
RBS_cassette Version 1 (Component)
AvrII restriction site (cctagg), overlapped with RBS (aggagga)

BBa_K743013
BBa_K743013 Version 1 (Component)
Arabinose --> HIV protease secretion

BBa_I712043
BBa_I712043 Version 1 (Component)
CMVp - myristoilation site - HIV protease cleavage site - T7RNAP - NLS

BBa_I712044
BBa_I712044 Version 1 (Component)
CMVp - myristoilation site - HIV protease cleavage site - mCherry - NLS

His-Stop
BBa_K133133 Version 1 (Component)
His affinity tag-stop

BBa_I712046
BBa_I712046 Version 1 (Component)
CMVp - HA - CD4 - HIV protease cleavage site - GFP

lox
BBa_J61046 Version 1 (Component)
[Lox] site for recombination

Hin
BBa_J31000 Version 1 (Component)
DNA-invertase Hin from Salmonella typhimurium

BBa_K165011
BBa_K165011 Version 1 (Component)
Zif268-HIV binding sites (3)

BBa_I712047
BBa_I712047 Version 1 (Component)
CMVp - HA - CD4 - HIV protease cleavage site - T7RNAP - NLS

TEV Site
BBa_K2075003 Version 1 (Component)
TEV cleavage site