Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_K2066019
BBa_K2066019 Version 1 (Component)
UNS 3 Sequence, from Torella et al., 2013

araC
BBa_C0080 Version 1 (Component)
araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)

Prm +
BBa_I12007 Version 1 (Component)
Modified lambda Prm promoter (OR-3 obliterated)

BBa_I13458
BBa_I13458 Version 1 (Component)
promoter C and arabinose C operon

BBa_J28018
BBa_J28018 Version 1 (Component)
Operon 3 (d)

BBa_K209399
BBa_K209399 Version 1 (Component)
AarI A-D acceptor vector

BBa_J28017
BBa_J28017 Version 1 (Component)
Operon 3 (d)

"D"
BBa_K1080002 Version 1 (Component)
ChlD

BBa_K322123
BBa_K322123 Version 1 (Component)
Phycobilin synthesis operon without terminator

BBa_I746104
BBa_I746104 Version 1 (Component)
P2 promoter in agr operon from S. aureus

BBa_K106017
BBa_K106017 Version 1 (Component)
AarI "D" site scar sequence

BBa_K554008
BBa_K554008 Version 1 (Component)
Hemolysin D - HlyD

PT7-D
BBa_I716106 Version 1 (Component)
T7 Promoter (Mutant D)

Operon2
BBa_K808007 Version 1 (Component)
putative terephtalate uptake operon2

HP3 3
BBa_B0101 Version 1 (Component)
HP3 3

BBa_J28020
BBa_J28020 Version 1 (Component)
Operon 3 (f)

BBa_J28005
BBa_J28005 Version 1 (Component)
Operon 3 (a)

BBa_J28019
BBa_J28019 Version 1 (Component)
Operon 3 (e)

BBa_J28006
BBa_J28006 Version 1 (Component)
Operon 3 (b)

BBa_J28007
BBa_J28007 Version 1 (Component)
Operon 3 (c)

BBa_J28021
BBa_J28021 Version 1 (Component)
Operon 3 (g)

BBa_I766217
BBa_I766217 Version 1 (Component)
Stop-D-BamHI-Adh Terminator Adaptor

BBa_K1051201
BBa_K1051201 Version 1 (Component)
D-BOX

BBa_K309012
BBa_K309012 Version 1 (Component)
Unc-54 3' UTR (for use in C. elegans chassis)

BBa_K209406
BBa_K209406 Version 1 (Component)
AarI C-D part, Beta Pix

BBa_K165011
BBa_K165011 Version 1 (Component)
Zif268-HIV binding sites (3)

BBa_K909000
BBa_K909000 Version 1 (Component)
Phycocyanobilin synthesis operon

RFC105 NN
BBa_K1362415 Version 1 (Component)
N-terminal splicing overhang TGCT=Cys+1/3 Leu|Ile RFC[105] overhang NN

BBa_K209006
BBa_K209006 Version 1 (Component)
Aar1 C-D part, Dd5P2 (aa435-787)

BBa_K769010
BBa_K769010 Version 1 (Component)
lux operon

BBa_K209404
BBa_K209404 Version 1 (Component)
AarI C-D part, ActA (30-612)

BBa_K209410
BBa_K209410 Version 1 (Component)
AarI C-D part, ActA (255-392)

BBa_K1763424
BBa_K1763424 Version 1 (Component)
MaSp2-3(1C3)

Cytosine D
BBa_J32019 Version 1 (Component)
Cytosine Deaminase WSU

BBa_K1061003
BBa_K1061003 Version 1 (Component)
RIP 3

BBa_M300052
BBa_M300052 Version 1 (Component)
m13k07 - Gene 3

BBa_K2149017
BBa_K2149017 Version 1 (Component)
Operon Lux C,E and D with an aldehyde decarbonylase

BBa_K1351030
BBa_K1351030 Version 1 (Component)
LMU Bacillus RBS collection 3

BBa_K1499000
BBa_K1499000 Version 1 (Component)
wssF gene from wss operon

Cytosine D
BBa_J32002 Version 1 (Component)
Cytosine Deaminase

BBa_J202002
BBa_J202002 Version 1 (Component)
PBAD Mutant#3

BBa_K209408
BBa_K209408 Version 1 (Component)
AarI C-D part, Intersectin (ITSN)