Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_I13458
BBa_I13458 Version 1 (Component)
promoter C and arabinose C operon

tetA(C)f
BBa_J31007 Version 1 (Component)
tetracycline resistance protein TetA(C) (forward), [cf. BBa_J31006]

araC
BBa_C0080 Version 1 (Component)
araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)

tetA(C)b
BBa_J31006 Version 1 (Component)
tetracycline resistance protein TetA(C) (backwards) [cf. BBa_J31007]

BBa_J28011
BBa_J28011 Version 1 (Component)
Operon 5 (c)

BBa_K209400
BBa_K209400 Version 1 (Component)
AarI B-C part, hM4D

BBa_K322123
BBa_K322123 Version 1 (Component)
Phycobilin synthesis operon without terminator

BBa_I746104
BBa_I746104 Version 1 (Component)
P2 promoter in agr operon from S. aureus

RFC105 Z
BBa_K1362421 Version 1 (Component)
C-terminal stop overhang TAAT=STOP+1/3Stop RFC[105] overhang Z

BBa_K2012000
BBa_K2012000 Version 1 (Component)
c-di-GMP tandem riboswitche bc3-5

BBa_K390018
BBa_K390018 Version 1 (Component)
sigA promoter, 5'UTR, and RBS

BBa_K390016
BBa_K390016 Version 1 (Component)
psaAB operon promoter, 5'UTR, and RBS

NpuDnaE(C)
BBa_K1362401 Version 1 (Component)
NpuDnaE C-Intein cloning piece

BBa_K309020
BBa_K309020 Version 1 (Component)
eCFP (for use in C. elegans chassis)

BBa_K249006
BBa_K249006 Version 1 (Component)
Fusion EYFP with C-terminal Arginine Tag

BBa_K209415
BBa_K209415 Version 1 (Component)
AarI B-C part, hM2D

BBa_J28009
BBa_J28009 Version 1 (Component)
Operon 5 (a)

Operon2
BBa_K808007 Version 1 (Component)
putative terephtalate uptake operon2

BBa_J28004
BBa_J28004 Version 1 (Component)
Operon 2 (c)

BBa_J28007
BBa_J28007 Version 1 (Component)
Operon 3 (c)

BBa_J28010
BBa_J28010 Version 1 (Component)
Operon 5 (b)

BBa_K390015
BBa_K390015 Version 1 (Component)
petBD operon promoter, 5'UTR, and RBS

BBa_K115017
BBa_K115017 Version 1 (Component)
RNA thermometer (ROSE 32??C)

BBa_K390017
BBa_K390017 Version 1 (Component)
psbA2 promoter, 5'UTR, and RBS

BBa_J28023
BBa_J28023 Version 1 (Component)
Operon 1(c)

BBa_K309012
BBa_K309012 Version 1 (Component)
Unc-54 3' UTR (for use in C. elegans chassis)

BBa_M36009
BBa_M36009 Version 1 (Component)
5' Bicistronic UTR (strong), does not include ATG start

BBa_K390013
BBa_K390013 Version 1 (Component)
cpcBA operon promoter, 5'UTR, and RBS

BBa_K209401
BBa_K209401 Version 1 (Component)
AarI B-C part, Rs1.3

BBa_K531001
BBa_K531001 Version 1 (Component)
<i>C. crescentus</i> S-layer RsaA C-term

c-Myc
BBa_I712007 Version 1 (Component)
c-Myc affinity tag

BBa_K909000
BBa_K909000 Version 1 (Component)
Phycocyanobilin synthesis operon

1NpuE(C*)
BBa_K1362103 Version 1 (Component)
RBS + NpuDnaE C-intein RFC[105] non-slicing control construct (with His6)

G-His6(N)
BBa_K1362430 Version 1 (Component)
C-terminal His6 (N-Intein)

amyE 5 IS
BBa_K143001 Version 1 (Component)
5??? Integration Sequence for the amyE locus of B. subtilis

BBa_K769010
BBa_K769010 Version 1 (Component)
lux operon

BBa_K531006
BBa_K531006 Version 1 (Component)
Optimized esp gene for <i>C. crescentus</i>

BBa_K771205
BBa_K771205 Version 1 (Component)
Vio C with Membrane Anchor 5

TerDnaE3(C
BBa_K1362131 Version 1 (Component)
RBS + TerDnaE3 C-intein RFC[105] assembly construct (with His6)

SspDnaB(C)
BBa_K1362141 Version 1 (Component)
RBS + SspDnaB C-intein RFC[105] assembly construct (with His6)

SspGyrB(C)
BBa_K1362121 Version 1 (Component)
RBS + SspGyrB C-intein RFC[105] assembly construct (with His6)

BBa_K1499000
BBa_K1499000 Version 1 (Component)
wssF gene from wss operon

hycAp
BBa_K778000 Version 1 (Component)
hycAp: Promoter of hyc operon activated by FhlA