Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

mCherry
BBa_J06504 Version 1 (Component)
monomeric RFP optimized for bacteria

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_K1986001
BBa_K1986001 Version 1 (Component)
Optimizer in lipid production

mCherry
BBa_J06505 Version 1 (Component)
monomeric RFP optimized for bacteria

BBa_J70029
BBa_J70029 Version 1 (Component)
RBS + mCherry gene, optimized for expression in Me. florum and E. coli

BBa_K1051003
BBa_K1051003 Version 1 (Component)
Stop codon free GFP in RFC[23] standard

mCherry
BBa_E2060 Version 1 (Component)
derivative of mRFP1, yeast-optimized

mRFP1
BBa_E2050 Version 1 (Component)
derivative of mRFP1, yeast-optimized

BBa_K553003
BBa_K553003 Version 1 (Component)
constitutive production of LasR trans-activator

yfp
BBa_K165005 Version 1 (Component)
Venus YFP, yeast optimized for fusion

BBa_K1321002
BBa_K1321002 Version 1 (Component)
Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25

BBa_K1051000
BBa_K1051000 Version 1 (Component)
Stop codon free RFP in RFC[23] standard

HisTag
BBa_J18909 Version 1 (Component)
His tag (6xHis; E. coli - optimized)

BBa_E2030
BBa_E2030 Version 1 (Component)
enhanced version of EYFP, yeast-optimized

BBa_K1321003
BBa_K1321003 Version 1 (Component)
Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25

BBa_K1100006
BBa_K1100006 Version 1 (Component)
optimized sfGFP with Csy4 insulator loci

mCherry
BBa_K165004 Version 1 (Component)
mCherry, yeast optimized for fusion

pET fusion
BBa_K1122673 Version 1 (Component)
Ethanol production module

BBa_K1321337
BBa_K1321337 Version 1 (Component)
sfGFP in Freiburg format (RFC 25)

preSCsite
BBa_J18919 Version 1 (Component)
preScission protease cleavage site (E. coli-optimized)

BBa_K315014
BBa_K315014 Version 1 (Component)
TetA (Optimized from bp 1 to 141)

BBa_K1491017
BBa_K1491017 Version 1 (Component)
Codon Optimized Supernova

BBa_K1491015
BBa_K1491015 Version 1 (Component)
Codon Optimized KillerRed

input-lacI
BBa_S03334 Version 1 (Component)
Constitutive lacI-production to block cI production.

BBa_K531006
BBa_K531006 Version 1 (Component)
Optimized esp gene for <i>C. crescentus</i>

BBa_K1027001
BBa_K1027001 Version 1 (Component)
Delta 9 Desaturase, optimised for expression in Escherichia coli

BBa_K1123001
BBa_K1123001 Version 1 (Component)
Protamine-1-Optimized Protein Production Construct

BsaI ->
BBa_K1362425 Version 1 (Component)
BsaI restriction site for RFC[???] cloning (in part in prefix)

BBa_K309020
BBa_K309020 Version 1 (Component)
eCFP (for use in C. elegans chassis)

BBa_K1149022
BBa_K1149022 Version 1 (Component)
pelB (E.coli optimized)

BBa_K130001
BBa_K130001 Version 1 (Component)
lipD

BBa_K640000
BBa_K640000 Version 1 (Component)
Codon optimized Luciferase for use in microalgae

HerE
BBa_K1615045 Version 1 (Component)
Heroin Esterase in RFC25

BBa_K117000
BBa_K117000 Version 1 (Component)
Lysis gene (promotes lysis in colicin-producing bacteria strain)

fhlA
BBa_K778001 Version 1 (Component)
fhlA: a transcriptional activator for enhanced hydrogen production

BBa_K1051004
BBa_K1051004 Version 1 (Component)
Stop codon free mOrange in RFC[23] standard

BBa_K1027002
BBa_K1027002 Version 1 (Component)
Delta 12 Desaturase, optimised for expression in Escherichia coli

BBa_K812014
BBa_K812014 Version 1 (Component)
Auxin production device for expression in tadpole

BBa_I746104
BBa_I746104 Version 1 (Component)
P2 promoter in agr operon from S. aureus

BBa_K1587007
BBa_K1587007 Version 1 (Component)
Formate production

BBa_K309012
BBa_K309012 Version 1 (Component)
Unc-54 3' UTR (for use in C. elegans chassis)

TVEL5
BBa_K1615067 Version 1 (Component)
Laccase TVEL5 in RFC25

BBa_K2023009
BBa_K2023009 Version 1 (Component)
Gaussia luciferase coding sequence optimized for use in <i>E.coli</i> DH5-Alpha

BBa_K1448008
BBa_K1448008 Version 1 (Component)
In E coli mono-terpene production cassette