Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
BBa_B0034BBa_B0034 Version 1 (Component)RBS (Elowitz 1999) -- defines RBS efficiency
BBa_B0030BBa_B0030 Version 1 (Component)RBS.1 (strong) -- modified from R. Weiss
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0032BBa_B0032 Version 1 (Component)RBS.3 (medium) -- derivative of BBa_0030
BBa_B0014BBa_B0014 Version 1 (Component)double terminator (B0012-B0011)
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
BBa_B0033BBa_B0033 Version 1 (Component)RBS.4 (weaker) -- derivative of BBa_0030
BBa_E0430BBa_E0430 Version 1 (Component)EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)
lacIBBa_Q04121 Version 1 (Component)QPI (B0034.C0012.B0015.R0011)
tetRBBa_Q04400 Version 1 (Component)QPI (B0034.C0040.B0015.R0040)
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_Q04510BBa_Q04510 Version 1 (Component)QPI (B0034.C0051.B0015.R0051)
BBa_B0035BBa_B0035 Version 1 (Component)RBS (B0030 derivative)
BBa_K2066527BBa_K2066527 Version 1 (Component)B0034 with scar TACTAG
EYFPBBa_E0034 Version 1 (Component)enhanced yellow fluorescent protein derived from A. victoria GFP
BBa_B0024BBa_B0024 Version 1 (Component)double terminator (B0012-B0011), reversed
BBa_S0100BBa_S0100 Version 1 (Component)B0034.C0012
BBa_E0422BBa_E0422 Version 1 (Component)ECFP (RBS+ LVA+ TERM) (B0034.E0022.B0015)
BBa_E0420BBa_E0420 Version 1 (Component)ECFP (RBS+ LVA- TERM) (B0034.E0020.B0015)
BBa_E0434BBa_E0434 Version 1 (Component)B0034.E0034.B0015
BBa_K1497023BBa_K1497023 Version 1 (Component)Pelargonidin producing operon B0034-F3H-B0034-DFR-B0034-eANS
BBa_K1497015BBa_K1497015 Version 1 (Component)Pelargonidin producing operon - T7-B0034-F3H-B0034-DFR-B0034-eANS
BBa_S03518BBa_S03518 Version 1 (Component)B0034:C0040
BBa_S03154BBa_S03154 Version 1 (Component)B0034.C0078
BBa_K1497014BBa_K1497014 Version 1 (Component)Pelargonidin producing operon (low yield)- T7-B0034-F3H-B0034-DFR-B0034-ANS
BBa_S03156BBa_S03156 Version 1 (Component)B0034.C0079
BBa_K208010BBa_K208010 Version 1 (Component)Lac Promoter (BBa_R0010) and RBS (B0034)
BBa_E0432BBa_E0432 Version 1 (Component)EYFP (RBS+ LVA+ TERM) (B0034.E0032.B0015)
BBa_B0054BBa_B0054 Version 1 (Component)Transcriptional terminator
BBa_K592016BBa_K592016 Version 1 (Component)B0034-YF1-B0034-FixJ, blue light sensor and RR with RBS
BBa_Q01121BBa_Q01121 Version 1 (Component)QPI (B0031.C0012.B0015.R0011)
BBa_A340620BBa_A340620 Version 1 (Component)Quadpart Amplifier (B0034.C0062.B0015.R0062)
BBa_K592025BBa_K592025 Version 1 (Component)B0034-amilCP
BBa_S0105BBa_S0105 Version 1 (Component)B0034.C0053
BBa_S0104BBa_S0104 Version 1 (Component)B0034.C0052
BBa_K1497018BBa_K1497018 Version 1 (Component)B0034-F3H-B0034-DFR
BBa_I0460BBa_I0460 Version 1 (Component)aiiA Device (B0034.C0060.B0015)
BBa_S0103BBa_S0103 Version 1 (Component)B0034.C0051
BBa_B0036BBa_B0036 Version 1 (Component)Specialized RBS