SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_J04450BBa_J04450 Version 1 (Component)RFP Coding Device
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_K1067009BBa_K1067009 Version 1 (Component)Periplasm transport visualization device
BBa_J09855BBa_J09855 Version 1 (Component)Constitutive luxR device with pLuxR
BBa_F1610BBa_F1610 Version 1 (Component)3OC<sub>6</sub>HSL Sender Device
BBa_F2622BBa_F2622 Version 1 (Component)3OC<sub>6</sub>HSL Receiver Device
PelBBBa_J32015 Version 1 (Component)PelB leader sequence; directs protein to E. coli periplasmic membrane
BBa_K1420003BBa_K1420003 Version 1 (Component)MerP, mercuric transport protein periplasmic component
BBa_I763026BBa_I763026 Version 1 (Component)LacI coding device regulated by pTetR
BBa_F2621BBa_F2621 Version 1 (Component)3OC<sub>6</sub>HSL Receiver Device
TonBBBa_I765003 Version 1 (Component)TonB ferric siderophore transport system, periplasmic binding protein TonB [ Pseudomonas entomophila
BBa_K112808BBa_K112808 Version 1 (Component)Enterobacteria phage T4 Lysis Device - no promoter
BBa_I0460BBa_I0460 Version 1 (Component)aiiA Device (B0034.C0060.B0015)
BBa_K1355001BBa_K1355001 Version 1 (Component)Regulation and transport of mercury ions
BBa_K237008BBa_K237008 Version 1 (Component)OmpA leader sequence - Targeting to periplasm, cleaved during transport
VanBPBBa_J58105 Version 1 (Component)Synthetic periplasmic binding protein that docks a vanillin molecule
BBa_M36042BBa_M36042 Version 1 (Component)EfeU elemental iron (II) transporter
BBa_K1420005BBa_K1420005 Version 1 (Component)merT, mercuric transport protein
BBa_K523001BBa_K523001 Version 1 (Component)RBS + malS (E. coli periplasmic α-amylase)
DsbABBa_K243002 Version 1 (Component)DsbA signal sequence (enables periplasm export)
BBa_J07022BBa_J07022 Version 1 (Component)sigma factor FecI controls iron transport
BBa_K1151006BBa_K1151006 Version 1 (Component)HpNikR coding device
BBa_K300009BBa_K300009 Version 1 (Component)PoPS->3OC6HSL sender device
BBa_T9002BBa_T9002 Version 1 (Component)GFP Producer Controlled by 3OC6HSL Receiver Device
BBa_J24806BBa_J24806 Version 1 (Component)Nickel Transport Protein
BBa_K317028BBa_K317028 Version 1 (Component)Phototaxis Device (Atractant)
BBa_K1973026BBa_K1973026 Version 1 (Component)glpF (membrane transporter)
BBa_K300010BBa_K300010 Version 1 (Component)PoPS-based self-inducible device
BBa_K258001BBa_K258001 Version 1 (Component)Lipase ABC transporter recognition domain (LARD 1)
BBa_E0435BBa_E0435 Version 1 (Component)PoPS->lacZalpha reporter device
BBa_K2022011BBa_K2022011 Version 1 (Component)GFP, with Periplasm-localisation Tag
BBa_K2022010BBa_K2022010 Version 1 (Component)RFP, with Periplasm-localisation Tag
BBa_K410000BBa_K410000 Version 1 (Component)Periplasmic Heat Generation
BBa_K577006BBa_K577006 Version 1 (Component)YFP Coding Device
BBa_K519030BBa_K519030 Version 1 (Component)Photocontrol device
BBa_K2022002BBa_K2022002 Version 1 (Component)TolR, Periplasmic Domain
LacYBBa_K079015 Version 1 (Component)LacY transporter protein from E. coli
GluColiBBa_K196014 Version 1 (Component)Final GluColi device.
BBa_K864404BBa_K864404 Version 1 (Component)cjBlue Coding Device
BBa_M34576BBa_M34576 Version 1 (Component)Arsenic Transport
BBa_K902004BBa_K902004 Version 1 (Component)Periplasmic beta-D-glucoside glucohydrolase (bglX)
tphC_322aaBBa_K808001 Version 1 (Component)tphC: terephtalate periplasmatic binding proteine of the tripartite transporter family
BBa_K577004BBa_K577004 Version 1 (Component)RFP Coding Device
BBa_K1355004BBa_K1355004 Version 1 (Component)Mercury ions bioremediating device