Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
P(Lac) IQBBa_I14032 Version 1 (Component)promoter P(Lac) IQ
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
BBa_K864400BBa_K864400 Version 1 (Component)Ptac, trp & lac regulated promoter
pLacBBa_K1638000 Version 1 (Component)Lac operator
BBa_K314103BBa_K314103 Version 1 (Component)Lac induced expression cassette
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_J33207BBa_J33207 Version 1 (Component)lac promoter and lacZ
BBa_C0261BBa_C0261 Version 1 (Component)AHL-making Enzyme, luxI (+RBS)
BBa_I715039BBa_I715039 Version 1 (Component)pLac-RBS-RFP
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
pLac+cIBBa_I763005 Version 1 (Component)cI repressor (+LVA) regulated by pLac Promoter
BBa_K208010BBa_K208010 Version 1 (Component)Lac Promoter (BBa_R0010) and RBS (B0034)
RhIBBa_I14017 Version 1 (Component)P(Rhl)
pLac ColE2BBa_K914001 Version 1 (Component)pLac Colicin E2 Immunity protein
BBa_J31013BBa_J31013 Version 1 (Component)pLac Backwards [cf. BBa_R0010]
BBa_K091146BBa_K091146 Version 1 (Component)pLas/Lux Hybrid Promoter
BBa_J22101BBa_J22101 Version 1 (Component)Lac Y gene
PT5lacBBa_K592008 Version 1 (Component)T5-lac Promoter
BBa_K876011BBa_K876011 Version 1 (Component)pTet-LasR-DT-pLas-LacI-RFP-ST-pLac-LuxI
BBa_I715040BBa_I715040 Version 1 (Component)pLac-RBS-RFP-RBS-GFP
BBa_K1713000BBa_K1713000 Version 1 (Component)Plac/ara-1, a hybrid promoter
pLasBBa_K1893030 Version 1 (Component)LasR inducible promoter (pLas)
BBa_K523013BBa_K523013 Version 1 (Component)Plac + INP-EYFP
BBa_K741002BBa_K741002 Version 1 (Component)plac-RBS-GFP-T
pLac+GFPBBa_I763004 Version 1 (Component)GFP coding device switched on by IPTG
BBa_K199191BBa_K199191 Version 1 (Component)pLac+tRNA CCACC+pLac+tRNA AGGAC+pLac+tRNA CUACC
BBa_K611013BBa_K611013 Version 1 (Component)pLacI Characterization Construct
TALBBa_K1033000 Version 1 (Component)Tyrosine ammonia-lyase (TAL) with RBS