ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

lux pR
BBa_R0062 Version 1 (Component)
Promoter (luxR & HSL regulated -- lux pR)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

Prm +
BBa_I12007 Version 1 (Component)
Modified lambda Prm promoter (OR-3 obliterated)

Prm +
BBa_I12006 Version 1 (Component)
Modified lamdba Prm promoter (repressed by 434 cI)

BBa_K1618011
BBa_K1618011 Version 1 (Component)
Pro-GlgX

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

pRE
BBa_K116603 Version 1 (Component)
pRE promoter from λ phage

BBa_K118016
BBa_K118016 Version 1 (Component)
glgC16 (glgC with G336D substitution)

BBa_K1585310
BBa_K1585310 Version 1 (Component)
B0034.GlgA

BBa_K1618024
BBa_K1618024 Version 1 (Component)
Pro-GlgB-Rv3034c

BBa_K1585312
BBa_K1585312 Version 1 (Component)
B0034.GlgC

BBa_K1618010
BBa_K1618010 Version 1 (Component)
pSB1C3-GlgX

BBa_P10001
BBa_P10001 Version 1 (Component)
Pro+5U_At6GAL4UAS

BBa_P10002
BBa_P10002 Version 1 (Component)
Pro+5U_AtUbi10

GlgX
BBa_K1618025 Version 1 (Component)
GlgX without inducible promoter

BBa_K1045010
BBa_K1045010 Version 1 (Component)
RBS BBa_B0034 with inversed Pre- and Suffix

BBa_K118015
BBa_K118015 Version 1 (Component)
glgC coding sequence encoding ADP-glucose pyrophosphorylase

lux pR
BBa_R1062 Version 1 (Component)
Promoter, Standard (luxR and HSL regulated -- lux pR)<br>

BBa_K118018
BBa_K118018 Version 1 (Component)
rbs+glgC16 (glgC with G336D substitution)

BBa_K118017
BBa_K118017 Version 1 (Component)
rbs+glgC (ADP-glucose pyrophosphorylase)

BBa_K1585301
BBa_K1585301 Version 1 (Component)
GlgB

anti X
BBa_K1585350 Version 1 (Component)
glgX targeting plasmid

BBa_I714889
BBa_I714889 Version 1 (Component)
OR21 of PR and PRM

BBa_I746361
BBa_I746361 Version 1 (Component)
PO promoter from P2 phage

BBa_K1585311
BBa_K1585311 Version 1 (Component)
B0034.GlgB

BBa_I759002
BBa_I759002 Version 1 (Component)
pTet-spacer-cro

BBa_K2036021
BBa_K2036021 Version 1 (Component)
placm-pRE-RBS-Cro-RBS-CII-TT

Pr
BBa_I723018 Version 1 (Component)
Pr (promoter for XylR)

GlgB
BBa_K1618000 Version 1 (Component)
GlgB without inducible promoter