iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_J329004BBa_J329004 Version 1 (Component)Quorum Sensing Sender Part for Use in BBa_J329003
BBa_J329002BBa_J329002 Version 1 (Component)Intermediate part for making a QS system
BBa_J29003BBa_J29003 Version 1 (Component)PoPS->CrtE protein generator
FurBO_11498 Version 1 (Component) BBa_K329003BBa_K329003 Version 1 (Component)Strong RBS (B0034) - Tetracycline resistance protein TetA(C) (J31007)
BBa_J329003BBa_J329003 Version 1 (Component)Simple Quorum Sensing System Expressing YFP
BBa_K319003BBa_K319003 Version 1 (Component)yeast TEF1 promoter
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_J329050BBa_J329050 Version 1 (Component)Strong AiiA Expression Plasmid
BBa_K329004BBa_K329004 Version 1 (Component)Weak RBS (B0031) - Tetracycline resistance protein TetA(C) (J31007)
BBa_J329053BBa_J329053 Version 1 (Component)Medium AiiA Expression Part
BBa_J329001BBa_J329001 Version 1 (Component)Simple lux-based QS circuit expressing untagged GFP
BBa_J329006BBa_J329006 Version 1 (Component)Simple QS Circuit with GFP Controlled by LuxR Promoter
BBa_J329000BBa_J329000 Version 1 (Component)Simple lux-based QS system
BBa_K309020BBa_K309020 Version 1 (Component)eCFP (for use in C. elegans chassis)
BBa_J32003BBa_J32003 Version 1 (Component)Discriminate Killing
BBa_J329030BBa_J329030 Version 1 (Component)QS System with BBa_J329998 Synthetic RBS + Const. RFP Expression
BBa_K129003BBa_K129003 Version 1 (Component)LamB-maltose transporter membrane protein
BBa_J331003BBa_J331003 Version 1 (Component)kumamolisin-As
BBa_K329009BBa_K329009 Version 1 (Component)attC - double terminator (B0015) - attC - mRFP
BBa_K239003BBa_K239003 Version 1 (Component)Modified HypB promoter, activated by Fnr during oxygen deficiency
BBa_K329008BBa_K329008 Version 1 (Component)Double terminator (B0015) - attC - mRFP
BBa_K323003BBa_K323003 Version 1 (Component)Blues link nYFP stop T7 terminator
BBa_J119003BBa_J119003 Version 1 (Component)BsmBI-Rbs-LacZ1-BsaI
ori+TetRBBa_K320003 Version 1 (Component)Origin for Asaia and resistance to Tetracycline
BBa_J329011BBa_J329011 Version 1 (Component)LuxIR QS System II
BBa_J329010BBa_J329010 Version 1 (Component)luxIR Quroum Sensing System I
BBa_K309003BBa_K309003 Version 1 (Component)pStr-1 (C. elegans promoter)
BBa_K328003BBa_K328003 Version 1 (Component)cspA Cold box + UTR + SD +DB
BBa_J329051BBa_J329051 Version 1 (Component)Low AiiA Expression Plasmid