Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Activity)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

iGEM Feature Libraries
igem_feature_libraries_collection Version 1 (Unknown)
A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

Free Genes Feature Libraries
free_genes_feature_libraries_collection Version 1 (Unknown)
A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

mRFP1
BBa_E1010 Version 1 (Component)
**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)

OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)

BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

pSB1C3
pSB1C3 Version 1 (Component)
High copy BioBrick assembly plasmid

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_I714004
BBa_I714004 Version 1 (Component)
R100 relaxase ( nick the oriT of the R100 IncF-II conjugative plasmid )

BBa_B0033
BBa_B0033 Version 1 (Component)
RBS.4 (weaker) -- derivative of BBa_0030

BBa_I714031
BBa_I714031 Version 1 (Component)
OriT-R (Origin of Transfer for the R751-plasmid nic region)

BBa_J56012
BBa_J56012 Version 1 (Component)
Invertible sequence of dna includes Ptrc promoter

OriTF
BBa_J01002 Version 1 (Component)
OriT-F (Origin of Transfer for the F-plasmid nic region)

BLp
BBa_K238013 Version 1 (Component)
Exact promoter of the blue light receptor

BBa_I714030
BBa_I714030 Version 1 (Component)
OriT-F (Origin of Transfer for the F-plasmid nic region)

BBa_I13507
BBa_I13507 Version 1 (Component)
Screening plasmid intermediate

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

pSC101
BBa_I50041 Version 1 (Component)
pSC101 origin of replication, reverse

const.
BBa_R1075 Version 1 (Component)
Constitutive Promoter II

BBa_K1813044
BBa_K1813044 Version 1 (Component)
<i>nicF and nicE</i> Expression Cassette

BBa_K1813048
BBa_K1813048 Version 1 (Component)
<i>nicD, nicF and nicE</i> Regulon

BBa_I714032
BBa_I714032 Version 1 (Component)
OriT-S (Origin of Transfer for the pSC101-plasmid nic region)

OriT-RP4
BBa_K125320 Version 1 (Component)
OriT-RP4 (Origin of transfer for the RP4 plasmid)

BBa_I714001
BBa_I714001 Version 1 (Component)
trwC of R388 ( relaxase or nickase of the R388 conjugative plasmid )

BBa_K873003
BBa_K873003 Version 1 (Component)
conjugative transfer of RFG

Fok_a
BBa_K243000 Version 1 (Component)
Protein domain (active) of the restriction endonuclease FokI

BBa_K1813049
BBa_K1813049 Version 1 (Component)
<i>lacIR, nicC, nicX and nicD</i> Regulon

BBa_I13504
BBa_I13504 Version 1 (Component)
Screening plasmid intermediate

BBa_K1813047
BBa_K1813047 Version 1 (Component)
<i>lacIR, cch2, nicC, nicX and nicD</i> Regulon

amyE 5 IS
BBa_K143001 Version 1 (Component)
5??? Integration Sequence for the amyE locus of B. subtilis

BBa_K737033
BBa_K737033 Version 1 (Component)
galK is the leader sequence of galactokinase (GalK)

pCaiF
BBa_K398326 Version 1 (Component)
Promoter of the CaiF protein

ThiE
BBa_K558009 Version 1 (Component)
Thiamin monophosphate pyrophosphorylase