SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

Scar 25
BBa_B0105 Version 1 (Component)
RFC 25 Scar Sequence

Scar25 ATG
BBa_K1319106 Version 1 (Component)
RFC 25 Translation Start Scar Sequence

BBa_K2066018
BBa_K2066018 Version 1 (Component)
UNS 2 Sequence, from Torella et al., 2013

Coupling
Coupling Version 1 (Component)
Translational coupler

RFC 37
BBa_K245009 Version 1 (Component)
RFC 37 Scar Sequence

BBa_K225003
BBa_K225003 Version 1 (Component)
RTC counter element 2

BBa_J52008
BBa_J52008 Version 1 (Component)
luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)

BBa_K225002
BBa_K225002 Version 1 (Component)
RTC counter element 1

BBa_K1051003
BBa_K1051003 Version 1 (Component)
Stop codon free GFP in RFC[23] standard

BBa_K1321005
BBa_K1321005 Version 1 (Component)
Synthetic Phytochelatin EC(20) RFC[25]

BBa_K264001
BBa_K264001 Version 1 (Component)
Modular UP-element Design 2

BBa_K1051000
BBa_K1051000 Version 1 (Component)
Stop codon free RFP in RFC[23] standard

BBa_K1321339
BBa_K1321339 Version 1 (Component)
CBDcenA+Linker, RFC 25 standard

BBa_K1321009
BBa_K1321009 Version 1 (Component)
Nickel Binding Protein (NiBP) Freiburg format (RFC[25])

BBa_J22106
BBa_J22106 Version 1 (Component)
rec A (SOS) Promoter

BBa_K1321337
BBa_K1321337 Version 1 (Component)
sfGFP in Freiburg format (RFC 25)

SYFP2
BBa_K864100 Version 1 (Component)
Super Yellow Fluorescent Protein 2 (SYFP2)

BBa_K1114107
BBa_K1114107 Version 1 (Component)
Bicistronic Design RBS 2, MoClo Format with BC fusion sites

RFC 37
BBa_K245119 Version 1 (Component)
P2

RFC105 Z
BBa_K1362421 Version 1 (Component)
C-terminal stop overhang TAAT=STOP+1/3Stop RFC[105] overhang Z

BBa_M36932
BBa_M36932 Version 1 (Component)
Element 2 (Unidentified DNA from pD864: 954 to 1064)

BBa_K117002
BBa_K117002 Version 1 (Component)
LsrA promoter (indirectly activated by AI-2)

RFC105 A
BBa_K1362414 Version 1 (Component)
N-terminal start overhang (T)(A)-(G)ATG=RBS+Start RFC[105] A

RFC 37
BBa_K245131 Version 1 (Component)
ELST

BBa_K1763442
BBa_K1763442 Version 1 (Component)
MaSp1/2[1:2]-12(1C3)

BBa_K1763438
BBa_K1763438 Version 1 (Component)
MaSp1/2[2:1]-12(1C3)

BBa_K1456004
BBa_K1456004 Version 1 (Component)
Hypoxia Response Element(HRE)

OmpA
BBa_K103006 Version 1 (Component)
OmpA outer membrane protein A fused to linker; displays proteins on cell surface

Counter
BBa_J05050 Version 1 (Component)
Counter

BBa_K1486020
BBa_K1486020 Version 1 (Component)
rLuc[2]

BBa_M36042
BBa_M36042 Version 1 (Component)
EfeU elemental iron (II) transporter

BBa_K1051004
BBa_K1051004 Version 1 (Component)
Stop codon free mOrange in RFC[23] standard

<- BsaI
BBa_K1362423 Version 1 (Component)
BsaI reverse restriction site for RFC[105] cloning

BBa_K517005
BBa_K517005 Version 1 (Component)
erg20-2

BBa_I746200
BBa_I746200 Version 1 (Component)
FepA L8T Mutant - Large Diffusion pore for E. coli outer membrane.

BBa_K264003
BBa_K264003 Version 1 (Component)
Modular UP-element Design 4

BBa_K264010
BBa_K264010 Version 1 (Component)
Up Element design 2 with constitutive promoter BBa_J23112

UPcox1
BBa_K809003 Version 1 (Component)
Up elements of cox1 gene

BBa_K1470003
BBa_K1470003 Version 1 (Component)
Woodchuck Hepatitis Virus Posttranscriptional Regulatory Element (WPRE)

BBa_K079019
BBa_K079019 Version 1 (Component)
Lac 2 - operator library member

BBa_K2036004
BBa_K2036004 Version 1 (Component)
ABF2,abscisic acid responsive elements-binding factor 2

BBa_K1950000
BBa_K1950000 Version 1 (Component)
trc promoter + RBS

BBa_K1763439
BBa_K1763439 Version 1 (Component)
MaSp1/2[2:1]-12(T7)

BBa_K1763443
BBa_K1763443 Version 1 (Component)
MaSp1/2[1:2]-12(T7)

BBa_K1486007
BBa_K1486007 Version 1 (Component)
IFP[2]

pUSPA
BBa_K1620000 Version 1 (Component)
Promoter element UspA