Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
GFP reportBBa_E0240 Version 1 (Component)GFP generator
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
GAL1BBa_J63006 Version 1 (Component)yeast GAL1 promoter
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_I13401BBa_I13401 Version 1 (Component)GFP reporter for RHS of library test constructs
FurBO_11498 Version 1 (Component) BBa_K165002BBa_K165002 Version 1 (Component)Kozak sequence (yeast RBS)
hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_K1024002BBa_K1024002 Version 1 (Component)Reporter for quorum sensing systems in yeast
BBa_K801012BBa_K801012 Version 1 (Component)ADH1 yeast terminator
yfpBBa_K165005 Version 1 (Component)Venus YFP, yeast optimized for fusion
BBa_J70029BBa_J70029 Version 1 (Component)RBS + mCherry gene, optimized for expression in Me. florum and E. coli
BBa_K165010BBa_K165010 Version 1 (Component)ADH1 yeast transcription terminator
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
mCherryBBa_K165004 Version 1 (Component)mCherry, yeast optimized for fusion
BBa_K1913005BBa_K1913005 Version 1 (Component)lux quorum sensing system + GFP reporter
BBa_K1024003BBa_K1024003 Version 1 (Component)Reporter for Tet system in Yeast
pTEFBBa_K165037 Version 1 (Component)TEF2 yeast constitutive promoter
BBa_K392003BBa_K392003 Version 1 (Component)yeast ADH1 terminator
BBa_K1499500BBa_K1499500 Version 1 (Component)quorum sensing machinery that activates GFP expression
BBa_K1696009BBa_K1696009 Version 1 (Component)Lactate sensing system
mCherryBBa_E2060 Version 1 (Component)derivative of mRFP1, yeast-optimized
BBa_J61002BBa_J61002 Version 1 (Component)EX-Ptet-S-rbsRFP-P "RFP reporter"
pPQSBBa_K1157000 Version 1 (Component)promoter sequence for PQS quorum sensing
BBa_K530008BBa_K530008 Version 1 (Component)TDH3 Yeast Promoter
mRFP1BBa_E2050 Version 1 (Component)derivative of mRFP1, yeast-optimized
P0310BBa_J63005 Version 1 (Component)yeast ADH1 promoter
BBa_K309020BBa_K309020 Version 1 (Component)eCFP (for use in C. elegans chassis)
BBa_J329004BBa_J329004 Version 1 (Component)Quorum Sensing Sender Part for Use in BBa_J329003
BBa_J329010BBa_J329010 Version 1 (Component)luxIR Quroum Sensing System I
BBa_K1073002BBa_K1073002 Version 1 (Component)Inducible promoter of the lux quorum sensing system with RBS
BBa_J329003BBa_J329003 Version 1 (Component)Simple Quorum Sensing System Expressing YFP
comDE natiBBa_K1351015 Version 1 (Component)comDE Quorum Sensing two component system - native
BBa_K726008BBa_K726008 Version 1 (Component)T7 driven lac operated inducer for the rhl quorum-sensing system
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_M39016BBa_M39016 Version 1 (Component)Quorum Sensing Device
BBa_J95001BBa_J95001 Version 1 (Component)Renilla Reniformis luciferase reporter
BBa_K359005BBa_K359005 Version 1 (Component)Senses AIP and has RFP reporter (from Agr quorum sensing system)
comDEBBa_K1351016 Version 1 (Component)comDE Quorum Sensing two component system (Freiburg Standard)
BBa_J23008BBa_J23008 Version 1 (Component)[key3c] riboregulator for lock3 variants