SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
tetRBBa_C0040 Version 1 (Component)tetracycline repressor from transposon Tn10 (+LVA)
lacIBBa_C0012 Version 1 (Component)lacI repressor from E. coli (+LVA)
cI lamBBa_C0051 Version 1 (Component)cI repressor from E. coli phage lambda (+LVA)
luxrBBa_C0062 Version 1 (Component)luxR repressor/activator, (no LVA?)
BBa_B0031BBa_B0031 Version 1 (Component)RBS.2 (weak) -- derivative of BBa_0030
cI 434BBa_C0052 Version 1 (Component)cI repressor from phage 434 (+LVA)
BBa_K2066018BBa_K2066018 Version 1 (Component)UNS 2 Sequence, from Torella et al., 2013
c2 P22BBa_C0053 Version 1 (Component)c2 repressor from Salmonella phage P22 (+LVA)
BBa_J05115BBa_J05115 Version 1 (Component)Repressor ZF-2*e2
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
AraBBa_K808000 Version 1 (Component)araC-Pbad - Arabinose inducible regulatory promoter/repressor unit
cI HK022BBa_C0050 Version 1 (Component)cI repressor from phage HK022 (+LVA?)
BBa_J13002BBa_J13002 Version 1 (Component)TetR repressed POPS/RIPS generator
rhlRBBa_C0071 Version 1 (Component)rhlR repressor/activator from P. aeruginosa PA3477 (+LVA)
BBa_J52008BBa_J52008 Version 1 (Component)luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)
BBa_J05222BBa_J05222 Version 1 (Component)ZF-2*e2 Binding Site
rhIRBBa_C0171 Version 1 (Component)rhlR repressor/activator from P. aeruginosa PA3477 (no LVA)
BBa_J05101BBa_J05101 Version 1 (Component)Repressor R3-e2
penIBBa_C0074 Version 1 (Component)penI repressor from Bacillus licheniformis (+LVA)
Prm +BBa_I12006 Version 1 (Component)Modified lamdba Prm promoter (repressed by 434 cI)
BBa_K1813019BBa_K1813019 Version 1 (Component)LacI Repressor Reversed
lacIBBa_C0013 Version 1 (Component)Repressor, lacI
BBa_C0056BBa_C0056 Version 1 (Component)cI repressor from phage 434 (no LVA)
BBa_J05105BBa_J05105 Version 1 (Component)Repressor R3-e2 (LVA+)
BBa_J05112BBa_J05112 Version 1 (Component)Repressor R3-e2+ERD
luxRBBa_R0061 Version 1 (Component)Promoter (HSL-mediated luxR repressor)
Sin3BBa_K165003 Version 1 (Component)Sin3 Repression Domain
lacI tsBBa_J06501 Version 1 (Component)LacI repressor (temperature-sensitive mut 265) (+LVA)
pLac ColE2BBa_K914001 Version 1 (Component)pLac Colicin E2 Immunity protein
BBa_K1976027BBa_K1976027 Version 1 (Component)Colicin E2 immunity protein
BBa_J33201BBa_J33201 Version 1 (Component)E. coli chromosomal ars promoter with arsR repressor gene
SYFP2BBa_K864100 Version 1 (Component)Super Yellow Fluorescent Protein 2 (SYFP2)
BBa_K1114107BBa_K1114107 Version 1 (Component)Bicistronic Design RBS 2, MoClo Format with BC fusion sites
BBa_K131008BBa_K131008 Version 1 (Component)Intrinsic Colicin E2 Operon Terminator 2
BBa_K1212005BBa_K1212005 Version 1 (Component)TALe Binding Site 2 (specific to TAL repressor 2)
BBa_J34807BBa_J34807 Version 1 (Component)Ci repressor fusion 2
cI TP901BBa_C0075 Version 1 (Component)TP901 cI repressor from phage TP901-1 (+LVA)
TetRBBa_I732084 Version 1 (Component)Tet repressor generator (version1, TERM-)
BBa_K426021BBa_K426021 Version 1 (Component)Pbad{rbs_pelB>}zf+,FokI+!{rbs2_lamB>},zf-,FokI-!b1006
mnt (s)BBa_C0072 Version 1 (Component)mnt repressor (strong) from Salmonella phage P22 (+LVA)
BBa_K864203BBa_K864203 Version 1 (Component)LexA3 super-repressor
BBa_J05213BBa_J05213 Version 1 (Component)Regulator for R3-e2
BBa_K117002BBa_K117002 Version 1 (Component)LsrA promoter (indirectly activated by AI-2)