Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
luxrBBa_C0062 Version 1 (Component)luxR repressor/activator, (no LVA?)
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BSMT1BBa_J45004 Version 1 (Component)SAM:benzoic acid/salicylic acid carboxyl methyltransferase I; converts salicylic acid to methyl sali
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_M36401BBa_M36401 Version 1 (Component)Salicylic Acid to Methyl Salicylate Actuator
BBa_M36402BBa_M36402 Version 1 (Component)Salicylic Acid to Methyl Salicylate Actuator #2
lasrBBa_C0079 Version 1 (Component)lasR activator from P. aeruginosa PAO1(+LVA)
BBa_K228004BBa_K228004 Version 1 (Component)NahR( reverse) - salicylate promoter
SAMTBBa_J45001 Version 1 (Component)SAM:salicylic acid carboxyl methyltransferase; converts salicylic acid to methyl salicylate (winter
SAMTBBa_J45005 Version 1 (Component)SAM:salicylic acid carboxyl methyltransferase; converts salicylic acid to methyl salicylate (winterg
araCBBa_C0080 Version 1 (Component)araC arabinose operon regulatory protein (repressor/activator) from E. coli (+LVA)
lasRBBa_C0179 Version 1 (Component)lasR activator from P. aeruginosa PAO1(no LVA)
BSMT2BBa_J45007 Version 1 (Component)SAM:benzoic acid/salicylic acid carboxyl methyltransferase II; converts salicylic acid to methyl sal
rhlRBBa_C0071 Version 1 (Component)rhlR repressor/activator from P. aeruginosa PA3477 (+LVA)
BBa_I746352BBa_I746352 Version 1 (Component)delta activator from phiR73 phage
cinrBBa_C0077 Version 1 (Component)cinR activator from Rhizobium leguminosarum (+LVA)
rhIRBBa_C0171 Version 1 (Component)rhlR repressor/activator from P. aeruginosa PA3477 (no LVA)
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
BAT2BBa_J45008 Version 1 (Component)branched-chain amino acid transaminase (BAT2); converts leucine to alpha-ketoisocaproate
CD4 signalBBa_I712009 Version 1 (Component)CD4 signal peptide; localizes to plasma membrane
pchBABBa_J45017 Version 1 (Component)isochorismate pyruvate-lyase and isochorismate synthase (pchBA); converts chorismate to salicylate
BBa_K1769003BBa_K1769003 Version 1 (Component)Salicylic acid sensor
BBa_I746350BBa_I746350 Version 1 (Component)ogr activator from P2 phage
SAGBBa_J45300 Version 1 (Component)Salicylic acid generator
BBa_K1060003BBa_K1060003 Version 1 (Component)Methyl Salicylate Production
sacBBBa_K322921 Version 1 (Component)B. subtilis levansucrase. Lethal to E. coli in presence of sucrose.
BBa_J45015BBa_J45015 Version 1 (Component)pmsCEAB salicylic acid biosynthesis genes
BAMTBBa_J45002 Version 1 (Component)SAM:benzoic acid carboxyl methyltransferase; converts benzoic acid to methyl benzoate (floral odor)
BBa_K1769002BBa_K1769002 Version 1 (Component)Salicylic acid sensing Oscillator
BBa_K1403009BBa_K1403009 Version 1 (Component)Benzoic acid/salicylic acid carboxyl methyltransferase 1 (BSMT1) expression cassette
SGBBa_J45320 Version 1 (Component)Salicylate generator
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
BBa_K1060012BBa_K1060012 Version 1 (Component)Methyl Salicylate Production under TetR regulation
RcsBBBa_K200000 Version 1 (Component)Colanic acid global regulator -> RcsB
BBa_K957004BBa_K957004 Version 1 (Component)nah Operon for degradation of naphthalene to salicylate
BBa_I746351BBa_I746351 Version 1 (Component)pag activator from PSP3 phage
BBa_K553003BBa_K553003 Version 1 (Component)constitutive production of LasR trans-activator