SynBioHub

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SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

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BBa_B1001
BBa_B1001 Version 1 (Component)
Terminator (artifical, small, %T~=90)

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BBa_C0261
BBa_C0261 Version 1 (Component)
AHL-making Enzyme, luxI (+RBS)

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aiiA
BBa_C0060 Version 1 (Component)
autoinducer inactivation enzyme from Bacillus; hydrolyzes acetyl homoserine lactone

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EcoRI
EcoRI Version 1 (Component)

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NheI
NheI Version 1 (Component)

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PacI
PacI Version 1 (Component)

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SpeI
SpeI Version 1 (Component)

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BBa_B1002
BBa_B1002 Version 1 (Component)
Terminator (artificial, small, %T~=85%)

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aiiA
BBa_C0160 Version 1 (Component)
autoinducer inactivation enzyme aiiA (no LVA)

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BBa_J45000
BBa_J45000 Version 1 (Component)
Smell Enzyme

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BBa_B1005
BBa_B1005 Version 1 (Component)
Terminator (artificial, small, %T~=25%

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BBa_C0260
BBa_C0260 Version 1 (Component)
autoinducer inactivation enzyme, AaiiA (+RBS)

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BBa_B1003
BBa_B1003 Version 1 (Component)
Terminator (artificial, small, %T~=80)

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ATF1 gener
BBa_J45199 Version 1 (Component)
Banana odor enzyme (ATF1) generator

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BSMT1
BBa_J45119 Version 1 (Component)
Wintergreen odor enzyme (BMST1) generator

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//cds/enzyme
cds_enzyme Version 1 (Collection)

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//cds/enzyme/dnapolymerase
cds_enzyme_dnapolymerase Version 1 (Collection)

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//cds/enzyme/dnase
cds_enzyme_dnase Version 1 (Collection)

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//cds/enzyme/exonuclease
cds_enzyme_exonuclease Version 1 (Collection)

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//cds/enzyme/rnap
cds_enzyme_rnap Version 1 (Collection)

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//cds/enzyme/methylation
cds_enzyme_methylation Version 1 (Collection)

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BBa_K1658006
BBa_K1658006 Version 1 (Component)
CAD1 Enzyme

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//cds/enzyme/rnapolymerase
cds_enzyme_rnapolymerase Version 1 (Collection)

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BBa_K864440
BBa_K864440 Version 1 (Component)
Small RNA spot42

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BBa_K808025
BBa_K808025 Version 1 (Component)
FsC: Cutinase PET cleaving enzyme

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//cds/enzyme/chromatinremodeling
cds_enzyme_chromatinremodeling Version 1 (Collection)

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//cds/enzyme/endonuclease
cds_enzyme_endonuclease Version 1 (Collection)

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//cds/enzyme/ligase
cds_enzyme_ligase Version 1 (Collection)

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//cds/enzyme/phosphorylation
cds_enzyme_phosphorylation Version 1 (Collection)

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//cds/enzyme/lysis
cds_enzyme_lysis Version 1 (Collection)

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PchA/PchB
BBa_J45319 Version 1 (Component)
PchA & PchB enzyme generator

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//cds/enzyme/protease
cds_enzyme_protease Version 1 (Collection)

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CAT
BBa_C0100 Version 1 (Component)
Enzyme, chloramphenicol acetyltransferase or CAT

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EcoRI
EcoRI_rs Version (Component)

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//cds/enzyme/endonuclease/restriction
cds_enzyme_endonuclease_restriction Version 1 (Collection)

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BBa_K737031
BBa_K737031 Version 1 (Component)
Spot42 based small RNA1

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BBa_K737032
BBa_K737032 Version 1 (Component)
Spot42 based small RNA2

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Subtilin P
BBa_K104001 Version 1 (Component)
Sensor for small peptide Subtilin

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BBa_K1994000
BBa_K1994000 Version 1 (Component)
dCas9 enzyme

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BBa_J45219
BBa_J45219 Version 1 (Component)
Banana odor enzyme (ATF1) generator

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NheI
NheI_rs Version (Component)

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BBa_J45299
BBa_J45299 Version 1 (Component)
PchA & PchB enzyme generator

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BBa_C100002
BBa_C100002 Version 1 (Component)
ORF for BAMT odorant enzyme

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BBa_C100010
BBa_C100010 Version 1 (Component)
ORF of LIS odorant enzyme

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BBa_C100001
BBa_C100001 Version 1 (Component)
ORF for SAMT odorant enzyme

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BBa_C100009
BBa_C100009 Version 1 (Component)
ORF of LMS odorant enzyme

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BBa_B1004
BBa_B1004 Version 1 (Component)
Terminator (artificial, small, %T~=55)

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BBa_K1820022
BBa_K1820022 Version 1 (Component)
FspI restriction enzyme

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BBa_K1153001
BBa_K1153001 Version 1 (Component)
nrfA gene. Encodes nitrite reductase enzyme.

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