Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
pSB1A2pSB1A2 Version 1 (Component)pSB1A2 (Replaced by pSB1A3)
pSB1AK3pSB1AK3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1K3pSB1K3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1A3pSB1A3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1AC3pSB1AC3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB1T3pSB1T3 Version 1 (Component)High copy BioBrick assembly plasmid
pSB4C1pSB4C1 Version 1 (Component)pCK01 converted into BioBrick vector (formerly BBa_I739202)
pSB1C4pSB1C4 Version 1 (Component)High copy BioBrick assembly plasmid
pSB3K3pSB3K3 Version 1 (Component)Low to medium copy BioBrick standard vector
pSB4A3pSB4A3 Version 1 (Component)pSB4A3 (Replaced by pSB4A5)
pSB2K3pSB2K3 Version 1 (Component)Inducible copy number BioBrick plasmid
pSB1A1pSB1A1 Version 1 (Component)pUC19 with a BioBrick cloning site (Replaced by pSB1A3)
pSB1A7pSB1A7 Version 1 (Component)Transcriptionally insulated high copy BioBrick plasmid
pSB1AC0pSB1AC0 Version 1 (Component)pSB1AC0
pSB6C5pSB6C5 Version 1 (Component)pBR322 Derived Chloramphenicol Backbone
pSB3C5pSB3C5 Version 1 (Component)Low to medium copy BioBrick standard vector
pSB4C5pSB4C5 Version 1 (Component)Low copy BioBrick standard vector
BBa_K1321011BBa_K1321011 Version 1 (Component)SmtA metallothionein in Freiburg format (RFC[25])
RGD-His-StBBa_K133036 Version 1 (Component)RGD-His affinity tag-Stop
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_K1321012BBa_K1321012 Version 1 (Component)fMT metallothionein in Freiburg format (RFC[25])
Kozak & stBBa_J63003 Version 1 (Component)designed yeast Kozak sequence
BBa_K1321002BBa_K1321002 Version 1 (Component)Re-entry of BBa_K863111, Cellulose Binding Domain CBDclos in rfc25
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
BBa_K823055BBa_K823055 Version 1 (Component)pSB1C3F-Vector pSB1C3 with RFP-cassette in Freiburg Standard
pSB1A2BBa_K300988 Version 1 (Component)pSB1A2 without Prefix and Suffix
BBa_K1321003BBa_K1321003 Version 1 (Component)Re-entry of BBa_K863101, Cellulose Binding Domain CBDcex in rfc25
BBa_K1489002BBa_K1489002 Version 1 (Component)Lpp-OmpA-Linker (pSB1C3)
BBa_K1321122BBa_K1321122 Version 1 (Component)Smt fused to CBDcex
8BEBBa_K590056 Version 1 (Component)RrD_C70K-PSB1C3-High constitutive
BBa_K784023BBa_K784023 Version 1 (Component)MCS in pSB1C3
NPDC-1C3-HBBa_K590028 Version 1 (Component)NPDC-PSB1C3-High constitutive
BBa_K1743000BBa_K1743000 Version 1 (Component)Plastocyanin variant #1 in pSB1C3
BBa_K1743003BBa_K1743003 Version 1 (Component)Plastocyanin variant #3 in pSB1C3
BBa_K571003BBa_K571003 Version 1 (Component)acsCD/pSB1C3
BBa_K1321121BBa_K1321121 Version 1 (Component)Smt metallothionein fused to CBDclos
NosZ+SYFPBBa_K1866001 Version 1 (Component)NosZ gene+SuperYellowFluorescenceProtein (in pSB1A3)
BBa_K306000BBa_K306000 Version 1 (Component)omcBET in pSB1C3
AAR1C3BBa_K590027 Version 1 (Component)AAR-PSB1C3-High consititutive