Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1321340
BBa_K1321340 Version 1 (Component)
Double CBD (dCBD) with N-terminal linker

SEGA021
SEGA021 Version 1 (Component)
natural linear DNA.

SEGA022
SEGA022 Version 1 (Component)
natural linear DNA.

BBa_K1321120
BBa_K1321120 Version 1 (Component)
SmtA metallothionein fused to linker-dCBD

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_K1321121
BBa_K1321121 Version 1 (Component)
Smt metallothionein fused to CBDclos

BBa_K1321011
BBa_K1321011 Version 1 (Component)
SmtA metallothionein in Freiburg format (RFC[25])

OmpA
BBa_K103006 Version 1 (Component)
OmpA outer membrane protein A fused to linker; displays proteins on cell surface

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_K1321348
BBa_K1321348 Version 1 (Component)
sfGFP fused to dCBD with linker in RFC 25

BBa_K1321345
BBa_K1321345 Version 1 (Component)
NiBP fused to dCBD with linker in RFC 25

BBa_K1321150
BBa_K1321150 Version 1 (Component)
Metallothionein Fmt fused to linker-dCBD

BBa_K1321151
BBa_K1321151 Version 1 (Component)
metallothionein Fmt fused to CBDclos

BBa_K1321152
BBa_K1321152 Version 1 (Component)
metallothionein Fmt fused to CBDcex

BBa_K1321154
BBa_K1321154 Version 1 (Component)
CBDclos fused to metallothionein Fmt

BBa_K1321138
BBa_K1321138 Version 1 (Component)
Metallothionein SmtA with T7 promoter

BBa_K1321090
BBa_K1321090 Version 1 (Component)
Phytochelatin (PC) EC20 + Linker-dCBD

BBa_K1321100
BBa_K1321100 Version 1 (Component)
Phytochelatin (PC) EC20 fused to linker-dCBD with T7 promoter

linker
BBa_K133132 Version 1 (Component)
8 aa protein domain linker

BBa_K1321110
BBa_K1321110 Version 1 (Component)
Phytochelatin (PC) EC20 fused to linker-dCBD with LacI

BBa_K1321122
BBa_K1321122 Version 1 (Component)
Smt fused to CBDcex

BBa_K519010
BBa_K519010 Version 1 (Component)
SmtA

BBa_K1321126
BBa_K1321126 Version 1 (Component)
linker-CBDcipA-linker + metallothionein SmtA

BBa_K1321123
BBa_K1321123 Version 1 (Component)
Metallothionein SmtA + linker-CBDcipA-linker

BBa_K1615027
BBa_K1615027 Version 1 (Component)
MaoA fused to Linker+dCBD in RFC25

BBa_K1615050
BBa_K1615050 Version 1 (Component)
HerE fused to Linker+dCBD in RFC25

BBa_K1615005
BBa_K1615005 Version 1 (Component)
MorA fused to Linker+dCBD in RFC25

BBa_K1615093
BBa_K1615093 Version 1 (Component)
Linker+dCBD fused to mRFP in RFC25

BBa_K1615026
BBa_K1615026 Version 1 (Component)
Linker+dCBD fused to MaoA in RFC25

BBa_K1615004
BBa_K1615004 Version 1 (Component)
Linker+dCBD fused to MorA in RFC25

BBa_K1615071
BBa_K1615071 Version 1 (Component)
Linker+dCBD fused to TVEL5 in RFC25

BBa_K1615094
BBa_K1615094 Version 1 (Component)
mRFP fused to Linker+dCBD in RFC25

BBa_K1895998
BBa_K1895998 Version 1 (Component)
SmtA metallothionein and LVA tag.

BBa_K1462502
BBa_K1462502 Version 1 (Component)
PDZ domain + Linker

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

BBa_K1150013
BBa_K1150013 Version 1 (Component)
AGS Linker