Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_B0030BBa_B0030 Version 1 (Component)RBS.1 (strong) -- modified from R. Weiss
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_J23012BBa_J23012 Version 1 (Component)Spectinomycin R open-reading-frame basic part
BBa_K895006BBa_K895006 Version 1 (Component)GFP open reading frame
[trbCf]BBa_J23014 Version 1 (Component)trbCf open reading frame basic part
[TraGr]BBa_J23013 Version 1 (Component)TraGr open reading frame basic part
BBa_K1799016BBa_K1799016 Version 1 (Component)NsrR open reading frame
OriTRBBa_J01003 Version 1 (Component)OriT-R (Origin of transfer for the R-plasmid nic region)
BBa_J61044BBa_J61044 Version 1 (Component)[LLO] Listeriolysin open reading frame
BBa_K612008BBa_K612008 Version 1 (Component)TesA' Open Reading Frame
BBa_K209402BBa_K209402 Version 1 (Component)AarI A-B part, signal sequence-FLAG-YFP [SSFYFP]
BBa_K1875000BBa_K1875000 Version 1 (Component)This basic part contains a miniCMV promoter.
BBa_K209400BBa_K209400 Version 1 (Component)AarI B-C part, hM4D
BBa_K1792003BBa_K1792003 Version 1 (Component)alpha-Dextranase, secreted - Basic part
BBa_I717010BBa_I717010 Version 1 (Component)This is a basic composite part
BBa_I716002BBa_I716002 Version 1 (Component)yfbE iron promoter basic part
BBa_K1323012BBa_K1323012 Version 1 (Component)Spc - Spectinomycin Resistance Gene Coding Sequence
Aad9-TBBa_K143065 Version 1 (Component)Spectinomycin Resistance Protein (Aad9) - Terminator
Aad9BBa_K143031 Version 1 (Component)Aad9 Spectinomycin Resistance Gene
BBa_K109701BBa_K109701 Version 1 (Component)two random basic parts
BBa_S03119BBa_S03119 Version 1 (Component)--Specify Parts List--
BBa_K1799017BBa_K1799017 Version 1 (Component)NsrR open reading frame
BBa_I13602BBa_I13602 Version 1 (Component)Tet operator with CFP reporter (with LVA tag) [R/Tc+]
BBa_K209415BBa_K209415 Version 1 (Component)AarI B-C part, hM2D
BBa_K737017BBa_K737017 Version 1 (Component)This part conteins gvpC-20psi protein
BBa_I13601BBa_I13601 Version 1 (Component)Lac operator with CFP reporter (without LVA tag) [R/Lc-]
BBa_J70042BBa_J70042 Version 1 (Component)6his part for use with BioScaffold parts ATG-6his-GGATCC (glycine serine)
BBa_K341447BBa_K341447 Version 1 (Component)spectinomycin resistance gene
BBa_K341448BBa_K341448 Version 1 (Component)spectinomycin resistance gene
BBa_T1001BBa_T1001 Version 1 (Component)Kill this part
BBa_J72212BBa_J72212 Version 1 (Component)spectinomycin resistant pUC vector
BBa_K209401BBa_K209401 Version 1 (Component)AarI B-C part, Rs1.3
BBa_J70044BBa_J70044 Version 1 (Component)6his part for use with BioScaffold parts (G)GATCC(glycine serine)-6his-TAA
BBa_J72010BBa_J72010 Version 1 (Component){lacZ>} lacZ basic part with no stop in BBb
BBa_J42020BBa_J42020 Version 1 (Component)aadA1, spectinomycin/streptomycin resistance gene
BBa_J42021BBa_J42021 Version 1 (Component)aadA2, spectinomycin/streptomycin resistance gene
BBa_I714031BBa_I714031 Version 1 (Component)OriT-R (Origin of Transfer for the R751-plasmid nic region)
BBa_K737016BBa_K737016 Version 1 (Component)This part conteins gvpA protein's coding sequence.
BBa_J95032BBa_J95032 Version 1 (Component)Terminator measurement part 1 for R. sphaeroides
BBa_J95033BBa_J95033 Version 1 (Component)Terminator measurement part 2 for R. sphaeroides