Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Scar 25BBa_B0105 Version 1 (Component)RFC 25 Scar Sequence
BBa_J04450BBa_J04450 Version 1 (Component)RFP Coding Device
Scar25 ATGBBa_K1319106 Version 1 (Component)RFC 25 Translation Start Scar Sequence
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
RFC 37BBa_K245009 Version 1 (Component)RFC 37 Scar Sequence
BBa_K1321005BBa_K1321005 Version 1 (Component)Synthetic Phytochelatin EC(20) RFC[25]
BBa_K1321337BBa_K1321337 Version 1 (Component)sfGFP in Freiburg format (RFC 25)
BBa_K1051000BBa_K1051000 Version 1 (Component)Stop codon free RFP in RFC[23] standard
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_K1321339BBa_K1321339 Version 1 (Component)CBDcenA+Linker, RFC 25 standard
BBa_K1051003BBa_K1051003 Version 1 (Component)Stop codon free GFP in RFC[23] standard
BBa_K1321009BBa_K1321009 Version 1 (Component)Nickel Binding Protein (NiBP) Freiburg format (RFC[25])
BBa_K1159201BBa_K1159201 Version 1 (Component)Splitted and engineered C-terminal FbaB for isopeptide bound formation (SpyTag) in RFC[25]
BBa_K1321011BBa_K1321011 Version 1 (Component)SmtA metallothionein in Freiburg format (RFC[25])
BBa_K1321012BBa_K1321012 Version 1 (Component)fMT metallothionein in Freiburg format (RFC[25])
BBa_K1321342BBa_K1321342 Version 1 (Component)sfGFP fused to CBDcex in RFC 25
BBa_K1159021BBa_K1159021 Version 1 (Component)SpyTag in RFC 25
BBa_K1321341BBa_K1321341 Version 1 (Component)sfGFP fused to CBDclos in RFC 25
BBa_K1159001BBa_K1159001 Version 1 (Component)NanoLuc Luciferase in RFC[25]
RBS-RFPBBa_K093005 Version 1 (Component)RFP with RBS
BBa_K1321349BBa_K1321349 Version 1 (Component)CBDcex fused to sfGFP in RFC 25
BBa_K1321343BBa_K1321343 Version 1 (Component)NiBP fused to CBDclos in RFC 25
BBa_K1321344BBa_K1321344 Version 1 (Component)NiBP fused to CBDcex in RFC 25
BBa_K1159207BBa_K1159207 Version 1 (Component)Membrane-anchored SpyTag in RFC[25] N-Part
BBa_K1321346BBa_K1321346 Version 1 (Component)CBDclos fused to sfGFP in RFC 25
BBa_K1321347BBa_K1321347 Version 1 (Component)dCBD with N-terminal linker in RFC 25
BBa_K1159993BBa_K1159993 Version 1 (Component)25/25 Assembly Scar
BBa_K081014BBa_K081014 Version 1 (Component)RFP protein generator - PoPS->RFP
BBa_K1159205BBa_K1159205 Version 1 (Component)Secretory SpyTag (SERK-SigP_SpyTag) in RFC[25] N-Part
BBa_K1159203BBa_K1159203 Version 1 (Component)Secretory SpyTag (IgKappa-SigP_SpyTag) in RFC[25] N-Part
BBa_K1321348BBa_K1321348 Version 1 (Component)sfGFP fused to dCBD with linker in RFC 25
BBa_K1321345BBa_K1321345 Version 1 (Component)NiBP fused to dCBD with linker in RFC 25
BBa_K1051004BBa_K1051004 Version 1 (Component)Stop codon free mOrange in RFC[23] standard
BBa_K648013BBa_K648013 Version 1 (Component)GFP with Standard 25 Prefix/Suffix
BBa_K1159303BBa_K1159303 Version 1 (Component)Signal Peptide of SERK Receptor from <i>Physcomitrella patens</i> in RFC[25]
RFC 37BBa_K245119 Version 1 (Component)P2
BBa_K1321351BBa_K1321351 Version 1 (Component)CBDcenA with linker fused to NiBP in Freiburg format (RFC 25)
BBa_B1005BBa_B1005 Version 1 (Component)Terminator (artificial, small, %T~=25%
BsaI ->BBa_K1362425 Version 1 (Component)BsaI restriction site for RFC[???] cloning (in part in prefix)
mRFPrBBa_J31008 Version 1 (Component)RFP reverse
BBa_K1051002BBa_K1051002 Version 1 (Component)Stop codon free EYFP in RFC[23] standard
Scar25 TAABBa_K1319107 Version 1 (Component)RFC 25 Translation Stop Scar Sequence
RFC 37BBa_K245131 Version 1 (Component)ELST
BBa_K1159020BBa_K1159020 Version 1 (Component)SpyCatcher in RFC 25
REACh2BBa_K1319002 Version 1 (Component)RFC[25]-compatible dark quencher based on K1319000 (E0030)
BBa_K1051001BBa_K1051001 Version 1 (Component)Stop codon free ECFP in RFC[23] standard