Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
BBa_I717014BBa_I717014 Version 1 (Component)TF to FP link
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
CD4 signalBBa_I712009 Version 1 (Component)CD4 signal peptide; localizes to plasma membrane
BBa_K1033932BBa_K1033932 Version 1 (Component)spisPink, pink chromoprotein
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
BBa_K1199045BBa_K1199045 Version 1 (Component)LinA-F2A-LinB F2A can cleave LinA and LinB to mediate gamma-HCH
BBa_M50029BBa_M50029 Version 1 (Component)mTurquoise2 FP
BBa_K1033933BBa_K1033933 Version 1 (Component)asPink, pink chromoprotein
linkBBa_I13000 Version 1 (Component)linker sequence between lux systems
Lin-2BO_9115 Version 1 (Component) BBa_K105301BBa_K105301 Version 1 (Component)TF (mCherry_lexA_VP16)
BBa_K105302BBa_K105302 Version 1 (Component)TF (lexA_VP16_mCherry)
BBa_K105300BBa_K105300 Version 1 (Component)TF (lexA_mCherry_VP16)
BBa_J52014BBa_J52014 Version 1 (Component)NFkB-dnMyD88-link-rLuc
BBa_K784041BBa_K784041 Version 1 (Component)pTetO+ mCherry (FP)
BBa_K323061BBa_K323061 Version 1 (Component)YFP link CFP
BBa_K216005BBa_K216005 Version 1 (Component)PyeaR promoter, responsive to nitrate, nitrite and nitric oxide
hPc-TFBBa_J176062 Version 1 (Component)hPCD-TF
PelBBBa_J32015 Version 1 (Component)PelB leader sequence; directs protein to E. coli periplasmic membrane
BBa_K110010BBa_K110010 Version 1 (Component)yESapphire Optimized Yeast FP
BBa_S04710BBa_S04710 Version 1 (Component)hPCD-TF no promoter
BBa_K105303BBa_K105303 Version 1 (Component)Gal1p and TF (lexA_mCherry_VP16)
BBa_K105304BBa_K105304 Version 1 (Component)Gal1p and TF (lexA_VP16_mCherry)
BBa_K105305BBa_K105305 Version 1 (Component)Gal1p and TF (mCherry_lexA_VP16)
BBa_K1616003BBa_K1616003 Version 1 (Component)VVD link to YC155 (YFP Cter split)
BBa_E3030BBa_E3030 Version 1 (Component)FRET acceptor YPet (optimized to work with CyPet (Cyan FP) as donor
BBa_K323038BBa_K323038 Version 1 (Component)ATG cYFP link Jazz link His stop
BBa_K323020BBa_K323020 Version 1 (Component)ATG cYFP link Blues link His stop