Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
Prm +BBa_I12006 Version 1 (Component)Modified lamdba Prm promoter (repressed by 434 cI)
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_I13401BBa_I13401 Version 1 (Component)GFP reporter for RHS of library test constructs
Prm +BBa_I12007 Version 1 (Component)Modified lambda Prm promoter (OR-3 obliterated)
FurBO_11498 Version 1 (Component) //testtest Version 1 (Collection) hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
//test1test1 Version 1 (Collection) BBa_I12052BBa_I12052 Version 1 (Component)Test circuit for I12036
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
BBa_I12053BBa_I12053 Version 1 (Component)Test circuit for I12040
BBa_I12051BBa_I12051 Version 1 (Component)(New and improved) Test circuit for I12006
BBa_I12036BBa_I12036 Version 1 (Component)Modified lamdba Prm promoter (cooperative repression by 434 cI)
PESTBBa_J176018 Version 1 (Component)PEST
P22 attBBBa_I11032 Version 1 (Component)P22 ''attB'', reverse complement
BBa_I12028BBa_I12028 Version 1 (Component)Test construct for I12006
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
pLux/TetBBa_K176000 Version 1 (Component)pLux/Tet Hybrid Promoter: (LuxR+,TetR-)->PoPS
BBa_J23008BBa_J23008 Version 1 (Component)[key3c] riboregulator for lock3 variants
BBa_I12025BBa_I12025 Version 1 (Component)Test construct for I12007
scarBBa_G0000 Version 1 (Component)SpeI/XbaI scar for RBS-CDS junctions
BBa_S03705BBa_S03705 Version 1 (Component)I2033:I2032
loxBBa_J61046 Version 1 (Component)[Lox] site for recombination
BBa_K880005BBa_K880005 Version 1 (Component)Strong promoter, strong RBS combination for high expression levels of proteins
Zif23BBa_R2000 Version 1 (Component)Promoter, Zif23 regulated, test: between
BBa_I13535BBa_I13535 Version 1 (Component)Test construct for screening plasmid
BBa_S03881BBa_S03881 Version 1 (Component)I14016:S03873
mCherryBBa_J06505 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_I11030BBa_I11030 Version 1 (Component)integrase from E. coli phage P22
RBS-spoVGBBa_K143021 Version 1 (Component)SpoVG ribosome binding site (RBS) for B. subtilis
BBa_I12056BBa_I12056 Version 1 (Component)A protein (lambda cI) subassembly for modified BL oscillator based on I12036
testtestBBa_K1479018 Version 1 (Component)Just for test
cheZBBa_K629003 Version 1 (Component)cheZ, chemotaxis regulator, protein phosphatase for CheY
Prm +BBa_I12035 Version 1 (Component)Modified lamdba Prm promoter (repressed by p22 cI without cooperativity) RBS+
nickBBa_K1479014 Version 1 (Component)Just for Test
testBBa_K1479015 Version 1 (Component)Just for test
BBa_K648029BBa_K648029 Version 1 (Component)OR, operating region for Lambda switch
BBa_I12002BBa_I12002 Version 1 (Component)Barkai-Leibler design experiment part B (434cI)