Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Amp CasBBa_I13800 Version 1 (Component)Ampicillin Resistance Cassette
lux pRBBa_R0062 Version 1 (Component)Promoter (luxR & HSL regulated -- lux pR)
luxIBBa_C0061 Version 1 (Component)autoinducer synthetase for AHL
BBa_K314103BBa_K314103 Version 1 (Component)Lac induced expression cassette
BBa_K314100BBa_K314100 Version 1 (Component)High constitutive expression cassette
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
BBa_J72186BBa_J72186 Version 1 (Component)TrimR, pir expression cassette for genomic integration
FurBO_11498 Version 1 (Component) hixCBBa_J44000 Version 1 (Component)hixC binding site for Salmonella typhimurium Hin recombinase
BBa_K880005BBa_K880005 Version 1 (Component)Strong promoter, strong RBS combination for high expression levels of proteins
BBa_I739001BBa_I739001 Version 1 (Component)Constitutive expression cassette for TetR +LVA (J23100.B0034.C0040.B0015)
RBS_cassetteRBS_cassette Version 1 (Component)AvrII restriction site (cctagg), overlapped with RBS (aggagga)
kanRBBa_P1003 Version 1 (Component)kanamycin resistance cassette
luxIBBa_C0161 Version 1 (Component)autoinducer synthetase for AHL (no LVA)
BBa_K1321338BBa_K1321338 Version 1 (Component)T7 Expression vector
lasIBBa_C0078 Version 1 (Component)autoinducer synthetase for PAI from Pseudomonas aeruginosa
amyE 5 ISBBa_K143001 Version 1 (Component)5??? Integration Sequence for the amyE locus of B. subtilis
spacerBBa_B0040 Version 1 (Component)Spacer.1 (generic)
BBa_K606017BBa_K606017 Version 1 (Component)T7 polymerase expression casette for Bacillus Subtilis
PORBBa_K1080007 Version 1 (Component)POR
BBa_K2170301BBa_K2170301 Version 1 (Component)pcDNA5 for genomic integration
BBa_K1403013BBa_K1403013 Version 1 (Component)Geosmin expression cassette
BBa_I739002BBa_I739002 Version 1 (Component)Constitutive expression cassette for LacI +LVA (J23100.B0034.C0012.B0015)
BBa_J70029BBa_J70029 Version 1 (Component)RBS + mCherry gene, optimized for expression in Me. florum and E. coli
rhIIBBa_C0070 Version 1 (Component)autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
BBa_K314101BBa_K314101 Version 1 (Component)Low constitutive expression cassette
PrBBa_I723018 Version 1 (Component)Pr (promoter for XylR)
BBa_J23008BBa_J23008 Version 1 (Component)[key3c] riboregulator for lock3 variants
BBa_I13401BBa_I13401 Version 1 (Component)GFP reporter for RHS of library test constructs
BBa_K1813054BBa_K1813054 Version 1 (Component)pelB <i>AgCPR</i> Expression Cassette
CmRBBa_J61000 Version 1 (Component)chloramphenicol resistance cassette
cheZ UnitBBa_K518007 Version 1 (Component)cheZ expression cassette (no promoter)
scarBBa_G0000 Version 1 (Component)SpeI/XbaI scar for RBS-CDS junctions
BBa_K1813015BBa_K1813015 Version 1 (Component)<i>nicD</i> Expression Casette
BBa_K1813001BBa_K1813001 Version 1 (Component)<i>cch2</i> Expression Cassette
BBa_K1813030BBa_K1813030 Version 1 (Component)<i>nicX<i> Expression Cassette
BBa_K606010BBa_K606010 Version 1 (Component)LacI strong expression casette for B. Subtilis