Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Direct Sequence Pulldirect Version 1 (Activity)Used to indicate that a sequence was pulled directly from a source with no alterations made
Reverse Orientation Sequence Pullreverse_orientation Version 1 (Activity)Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Sequence Cut Out of Plasmidcut_out_of_plasmid Version 1 (Activity)Used to indicate that a sequence was cut out of the plasmid referenced as the source
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Unknown Alteration Sequence PullUnknown Version 1 (Activity)Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Codon Optimised Sequence Pullcodon_optimisation Version 1 (Activity)Used to indicate that a sequence was codon optimised after pulling from the source and before submission
Sequence Pull with Mutationsmutations Version 1 (Activity)Used to indicate that a sequence had mutations added after pulling from the source and before submission
pSB1C3pSB1C3 Version 1 (Component)High copy BioBrick assembly plasmid
GC Optimised Sequence PullGC_Optimised Version 1 (Activity)Used to indicate that a sequence was GC optimised after pulling from the source and before submission
mCherryBBa_J06504 Version 1 (Component)monomeric RFP optimized for bacteria
VRBBa_G00102 Version 1 (Component)Reverse BioBrick primer annealing site (VR binding site)
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_J64101BBa_J64101 Version 1 (Component)ColE1 biobrick plasmid with backward terminator
VR2BBa_J18907 Version 1 (Component)VR2: Reverse Primer to pSB1 Biobrick Vectors (optimized VR)
BBa_B0025BBa_B0025 Version 1 (Component)double terminator (B0015), reversed
BBa_J44001BBa_J44001 Version 1 (Component)Reverse RBS (RBS<sub>rev</sub>) -- corresponds to BBa_B0030
pSC101BBa_I50041 Version 1 (Component)pSC101 origin of replication, reverse
Truncated Sequence PullTruncated Version 1 (Activity)Used to indicate that a sequence was truncated after pulling from the source and before submission
VF2BBa_G00100 Version 1 (Component)Forward primer for sequencing/amplifying BioBrick parts (VF2)
VRBBa_G00101 Version 1 (Component)Reverse primer for sequencing/amplifying BioBrick parts (VR)
PBS_F24PBS_F24 Version 1 (Component) mRFPrBBa_J31008 Version 1 (Component)RFP reverse
VR8BBa_K176052 Version 1 (Component)Reverse primer VR8 (bind to K176042), member of VR3~VR12
VR4BBa_K176048 Version 1 (Component)Reverse primer VR4 (bind to K176038), member of VR3~VR12
VR5BBa_K176049 Version 1 (Component)Reverse primer VR5 (bind to K176039), member of VR3~VR12
VR7BBa_K176051 Version 1 (Component)Reverse primer VR7 (bind to K176041), member of VR3~VR12
VR9BBa_K176053 Version 1 (Component)Reverse primer VR9 (bind to K176043), member of VR3~VR12
VR6BBa_K176050 Version 1 (Component)Reverse primer VR6 (bind to K176040), member of VR3~VR12
BBa_P10598BBa_P10598 Version 1 (Component)GoldenBraid destination vector omega insert
BBa_P10599BBa_P10599 Version 1 (Component)GoldenBraid destination vector alpha insert
pSB1AT3pSB1AT3 Version 1 (Component)High copy BioBrick assembly plasmid
BBa_I13452BBa_I13452 Version 1 (Component)Adds another BioBrick site
BBa_K1321338BBa_K1321338 Version 1 (Component)T7 Expression vector
BBa_B0024BBa_B0024 Version 1 (Component)double terminator (B0012-B0011), reversed
VR3BBa_K176047 Version 1 (Component)Reverse primer VR3 (bind to K176037), member of VR3~VR12
VR12BBa_K176056 Version 1 (Component)Reverse primer VR12 (bind to K176046), member of VR3~VR12
BBa_J64100BBa_J64100 Version 1 (Component)Medium copy ColE1 BioBrick vector
BBa_J44002BBa_J44002 Version 1 (Component)pBAD reverse
VR10BBa_K176054 Version 1 (Component)Reverse primer VR10 (bind to K176044), member of VR3~VR12
VR11BBa_K176055 Version 1 (Component)Reverse primer VR11 (bind to K176045), member of VR3~VR12
BBa_K228009BBa_K228009 Version 1 (Component)AraC protein(reversed sequence) and Pbad promoter