Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_B1006
BBa_B1006 Version 1 (Component)
Terminator (artificial, large, %T~>90)

BBa_K1136000
BBa_K1136000 Version 1 (Component)
XP15 - Endolysin to target Xanthamonas campestris

BBa_K112806
BBa_K112806 Version 1 (Component)
[T4 endolysin]

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K1315005
BBa_K1315005 Version 1 (Component)
The <i>clp</i> gene from <i>Xanthomonas campestris</i>

BBa_K1315003
BBa_K1315003 Version 1 (Component)
The <i>rpfG</i> gene from <i>Xanthomonas campestris</i>

BBa_K1315006
BBa_K1315006 Version 1 (Component)
The <i>manA</i> promoter from <i>Xanthomonas campestris</i>

BBa_J44001
BBa_J44001 Version 1 (Component)
Reverse RBS (RBS_rev) -- corresponds to BBa_B0030

CD4 signal
BBa_I712009 Version 1 (Component)
CD4 signal peptide; localizes to plasma membrane

BBa_K1150038
BBa_K1150038 Version 1 (Component)
uniCAS RNAimer to target VEGF3

BBa_K1150037
BBa_K1150037 Version 1 (Component)
uniCAS RNaimer to target VEGF2

BBa_K1136003
BBa_K1136003 Version 1 (Component)
An L-Arabinose controlled endolysin from bacteriophage XP15

BBa_K1150039
BBa_K1150039 Version 1 (Component)
uniCAS RNAimer to target VEGF4

BBa_K1315002
BBa_K1315002 Version 1 (Component)
The <i>rpfC</i> gene from <i>Xanthomonas campestris</i>

BBa_K1150041
BBa_K1150041 Version 1 (Component)
uniCAS RNaimer to Bla Target 3

BBa_K1150040
BBa_K1150040 Version 1 (Component)
uniCAS RNAimer to Bla Target 2

BBa_K1150042
BBa_K1150042 Version 1 (Component)
uniCAS RNaimer to Bla Target 4

BBa_K1150036
BBa_K1150036 Version 1 (Component)
uniCAS RNAimer to target VEGF1

BBa_K863015
BBa_K863015 Version 1 (Component)
xccl laccase from Xanthomonas campestris with T7 promoter, RBS and His-tag

GC Optimised Sequence Pull
GC_Optimised Version 1 (Activity)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

BBa_M36453
BBa_M36453 Version 1 (Component)
Endolysin Coding Sequence

BBa_K1150044
BBa_K1150044 Version 1 (Component)
uniCAS RNaimer multiple targets to Bla target 3 and 4

BBa_K1150045
BBa_K1150045 Version 1 (Component)
uniCAS RNaimer multiple targets to VEGF 4 and bla target 2

End-rev
BBa_K1616006 Version 1 (Component)
Endolysin reversed

BBa_K1510011
BBa_K1510011 Version 1 (Component)
Extracellular endolysin

BBa_K216005
BBa_K216005 Version 1 (Component)
PyeaR promoter, responsive to nitrate, nitrite and nitric oxide

PelB
BBa_J32015 Version 1 (Component)
PelB leader sequence; directs protein to E. coli periplasmic membrane

BBa_K1150043
BBa_K1150043 Version 1 (Component)
uniCAS RNAimer multiple targets to VEGF 2 and VEGF 3

BBa_K1673402
BBa_K1673402 Version 1 (Component)
Endolysin (Mutation Optimized)

BBa_K189060
BBa_K189060 Version 1 (Component)
Gp15 of Bacteriophage Mu

BBa_K660614
BBa_K660614 Version 1 (Component)
T4 Endolysin + TT

BBa_K1595002
BBa_K1595002 Version 1 (Component)
EcnB from Xanthomonas arboricola

BBa_K1616022
BBa_K1616022 Version 1 (Component)
pDawn - Endolysin/Holin

BBa_K1150046
BBa_K1150046 Version 1 (Component)
uniCAS RNaimer multiple targets to Bla target 2, 3, 4 and VEGF 4

BBa_K1378032
BBa_K1378032 Version 1 (Component)
Endolysin from lambda phage