SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030

BBa_B0031
BBa_B0031 Version 1 (Component)
RBS.2 (weak) -- derivative of BBa_0030

BBa_K2066018
BBa_K2066018 Version 1 (Component)
UNS 2 Sequence, from Torella et al., 2013

BBa_K2066019
BBa_K2066019 Version 1 (Component)
UNS 3 Sequence, from Torella et al., 2013

BBa_C2045
BBa_C2045 Version 1 (Component)
Zif268 fingers 2 and 3.JunD

BBa_C2044
BBa_C2044 Version 1 (Component)
Zif268 fingers 2 and 3.JunB

Prm +
BBa_I12007 Version 1 (Component)
Modified lambda Prm promoter (OR-3 obliterated)

BBa_K165011
BBa_K165011 Version 1 (Component)
Zif268-HIV binding sites (3)

BBa_C2034
BBa_C2034 Version 1 (Component)
Zif268 fingers 2 and 3

BBa_J52008
BBa_J52008 Version 1 (Component)
luciferase: luciferin 2-monooxygenase from Renilla reniformis (EC 1.13.12.5; SwissProt:: P27652)

BBa_C2043
BBa_C2043 Version 1 (Component)
Zif268 fingers 2 and 3.Fos

BBa_K323105
BBa_K323105 Version 1 (Component)
Zif268 zinc finger + linker

BBa_K165006
BBa_K165006 Version 1 (Component)
Zif268-HIV DNA-binding domain

BBa_C2042
BBa_C2042 Version 1 (Component)
p53ZF fingers 1 and 2.JunD

Zif23
BBa_R2000 Version 1 (Component)
Promoter, Zif23 regulated, test: between

BBa_I2000
BBa_I2000 Version 1 (Component)
Dimeric Zif268 fingers 2 and 3 regulated GFP generator

BBa_C2041
BBa_C2041 Version 1 (Component)
p53ZF fingers 1 and 2.JunB

3-fingers
BBa_J35003 Version 1 (Component)
3-fingers arm

zif23
BBa_C2001 Version 1 (Component)
Zif23-GCN4 engineered repressor (+LVA, C2000 codon-optimized for E.coli)

Zif23
BBa_R2002 Version 1 (Component)
Promoter, Zif23 regulated, test: between and after

SYFP2
BBa_K864100 Version 1 (Component)
Super Yellow Fluorescent Protein 2 (SYFP2)

BBa_C2032
BBa_C2032 Version 1 (Component)
JunD

BBa_K1114107
BBa_K1114107 Version 1 (Component)
Bicistronic Design RBS 2, MoClo Format with BC fusion sites

HP3 3
BBa_B0101 Version 1 (Component)
HP3 3

BBa_C2007
BBa_C2007 Version 1 (Component)
Zif268-GCN4.MalE

BBa_C2033
BBa_C2033 Version 1 (Component)
p53ZF Fingers 1 and 2

BBa_K165022
BBa_K165022 Version 1 (Component)
Zif268-HIV synthetic activator (untagged)

BBa_K626002
BBa_K626002 Version 1 (Component)
Zinc Finger Protein 2.

BBa_K419005
BBa_K419005 Version 1 (Component)
system 1+2+3(2)

BBa_K1150043
BBa_K1150043 Version 1 (Component)
uniCAS RNAimer multiple targets to VEGF 2 and VEGF 3

BBa_K323107
BBa_K323107 Version 1 (Component)
PBSII zinc finger + linker

BBa_K309012
BBa_K309012 Version 1 (Component)
Unc-54 3' UTR (for use in C. elegans chassis)

BBa_C2040
BBa_C2040 Version 1 (Component)
p53ZF fingers 1 and 2.Fos

BBa_K117002
BBa_K117002 Version 1 (Component)
LsrA promoter (indirectly activated by AI-2)

BBa_K1763442
BBa_K1763442 Version 1 (Component)
MaSp1/2[1:2]-12(1C3)

BBa_K1763438
BBa_K1763438 Version 1 (Component)
MaSp1/2[2:1]-12(1C3)

BBa_K2033004
BBa_K2033004 Version 1 (Component)
(3S)-3-[(2-oxo-3-phenylpropyl)amino]oxolan-2-one (3-phenyl-HSL) Sender- BraI

RFC105 NN
BBa_K1362415 Version 1 (Component)
N-terminal splicing overhang TGCT=Cys+1/3 Leu|Ile RFC[105] overhang NN

BBa_K1486020
BBa_K1486020 Version 1 (Component)
rLuc[2]

BBa_K517005
BBa_K517005 Version 1 (Component)
erg20-2

BBa_K626004
BBa_K626004 Version 1 (Component)
Zinc Finger Protein 2. - Ecdysone Receptor LBD

BBa_K626007
BBa_K626007 Version 1 (Component)
Zinc Finger Protein 2. - Ecdysone Receptor LBD

BBa_J52997
BBa_J52997 Version 1 (Component)
testing testing 1, 2, 3

BBa_J52998
BBa_J52998 Version 1 (Component)
testing testing 1, 2, 3

BBa_K419004
BBa_K419004 Version 1 (Component)
system 1+2+3(1)

BBa_K1763424
BBa_K1763424 Version 1 (Component)
MaSp2-3(1C3)

BBa_K079019
BBa_K079019 Version 1 (Component)
Lac 2 - operator library member