iGEM Feature Librariesigem_feature_libraries_collection Version 1 (Unknown)A collection of iGEM feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Free Genes Feature Librariesfree_genes_feature_libraries_collection Version 1 (Unknown)A collection of Free Genes feature libraries for use with Synthetic Biology Curation Tools (SYNBICT).
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnDatabase_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
Cryptococcus neoformans Database in Synthetic Biology Open LanguageCnD_collection Version 1 (Unknown)This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.
ACS Synbio GenerationACS_Synbio_Generation Version 1 (Activity)Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
SBOLDesigner CAD ToolSBOLDesigner Version 3.1 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
SBOLDesigner CAD ToolSBOLDesigner Version 3.0 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
SBOLDesigner CAD ToolSBOLDesigner Version 2.2 (Agent)SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
BBa_J15001BBa_J15001 Version 1 (Component)strong synthetic E. coli ribosome binding site with SacI site.
Syn_FuelBBa_K610000 Version 1 (Component)alkane synthesis
BBa_M36710BBa_M36710 Version 1 (Component)alkB1 (alkane-1-monooxygenase)
BBa_K1321005BBa_K1321005 Version 1 (Component)Synthetic Phytochelatin EC(20) RFC[25]
phaC1-A-B1BBa_K934001 Version 1 (Component)phaC1-A-B1 [P(3HB) synthesis]
BBa_K1020005BBa_K1020005 Version 1 (Component)Alkane Marker--Device for detection of various alkanes
BBa_K1020002BBa_K1020002 Version 1 (Component)alkane regulatory protein ALKR
BBa_J61032BBa_J61032 Version 1 (Component)Alkaline phosphatase [phoA]
ladABBa_K398000 Version 1 (Component)Long-Chain Alkane Monooxygenase
BBa_K1020012BBa_K1020012 Version 1 (Component)Alkane Selector for intracellular alkane production
BBa_K322123BBa_K322123 Version 1 (Component)Phycobilin synthesis operon without terminator
BBa_K1020011BBa_K1020011 Version 1 (Component)High expressed Alkane Selector for intracellular alkane production
BBa_K1020008BBa_K1020008 Version 1 (Component)alkane producing module
BBa_K398014BBa_K398014 Version 1 (Component)Alkane Hydroxylase System
BBa_M36252BBa_M36252 Version 1 (Component)Alkane Sensor Part
BBa_K1020004BBa_K1020004 Version 1 (Component)Biosensor for alkane detection
alkB2BBa_K398001 Version 1 (Component)Medium-chain alkane 1-monooxygenase (Gordonia sp. TF6)
PcarBBa_K861171 Version 1 (Component)Pcar, synthetic promoter repressed by CRP
BBa_M36719BBa_M36719 Version 1 (Component)medium-chain alkane hydroxylating device
BBa_K137006BBa_K137006 Version 1 (Component)pabB (from pABA synthesis)
BBa_K125502BBa_K125502 Version 1 (Component)phaB BioPlastic polyhydroxybutyrate synthesis pathway (origin PCC6803 slr1993)
BBa_M36240BBa_M36240 Version 1 (Component)alkane-activated ranscription factor for alkB promoter
BBa_K784027BBa_K784027 Version 1 (Component)XhoI+RBS+Alkaline Phosphatase (phoA) +XmaI
pabABBa_K137005 Version 1 (Component)pabA (from pABA synthesis)
BBa_M36725BBa_M36725 Version 1 (Component)short-chain alkane hydroxylating device (mmoXYBZDC)
BBa_K909000BBa_K909000 Version 1 (Component)Phycocyanobilin synthesis operon
rib-synthBBa_K1172303 Version 1 (Component)Riboflavin synthesis gene cluster from shewanella oneidensis
BBa_K1350003BBa_K1350003 Version 1 (Component)Alkaline Cellulase
BBa_K248000BBa_K248000 Version 1 (Component)phoA (alkaline phosphatase) promoter
BBa_K118012BBa_K118012 Version 1 (Component)Synthetic ribosome binding site added by Son of Babel procedure
1018BBa_K1344000 Version 1 (Component)1018 synthetic cationic peptide
PfadRBBa_K861060 Version 1 (Component)PfadR, synthetic promoter with tandem FadR binding site
alkABO_2695 Version 1 (Component) BBa_K1470004BBa_K1470004 Version 1 (Component)Secreted Alkaline Phosphatase (SEAP)
BBa_K826000BBa_K826000 Version 1 (Component)cytochrome which catalyzes the terminal oxidation of alkanes
AlkABO_11322 Version 1 (Component) alkABO_30765 Version 1 (Component) lexABBa_K165020 Version 1 (Component)LexA Synthetic Activator (untagged)
BBa_I712028BBa_I712028 Version 1 (Component)CherryNLS - synthetic construct monomeric red fluorescent protein with nuclear localization sequence