Cryptococcus neoformans Database in Synthetic Biology Open Language
CnDatabase_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

Cryptococcus neoformans Database in Synthetic Biology Open Language
CnD_collection Version 1 (Unknown)
This is a collection of Biological Genetic Parts of Cryptococcus neoformans containing 23 different promoters, coding sequences and terminators, which were previously used and whose efficacy has already been proven in this organism. This work was made in order to facilitate the build and assembly of genetic circuits and plasmids for the study of this pathogen.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

Direct Sequence Pull
direct Version 1 (Activity)
Used to indicate that a sequence was pulled directly from a source with no alterations made

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Activity)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

Unknown Alteration Sequence Pull
Unknown Version 1 (Activity)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Activity)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

Sequence Pull with Mutations
mutations Version 1 (Activity)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Composite Sequence Pull
Composite Version 1 (Activity)
When multiple sources where combined to make a new part.

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Activity)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

comDE nati
BBa_K1351015 Version 1 (Component)
comDE Quorum Sensing two component system - native

comDE
BBa_K1351016 Version 1 (Component)
comDE Quorum Sensing two component system (Freiburg Standard)

BBa_K1351036
BBa_K1351036 Version 1 (Component)
Quorum sensing two component system (AIP-II sensing histidine kinase agrC, response regulator agrA)

Truncated Sequence Pull
Truncated Version 1 (Activity)
Used to indicate that a sequence was truncated after pulling from the source and before submission

BBa_K895007
BBa_K895007 Version 1 (Component)
Tetrathionate-sensing two-component system linked to GFP production.

BBa_K1696009
BBa_K1696009 Version 1 (Component)
Lactate sensing system

BBa_K748000
BBa_K748000 Version 1 (Component)
AgrA protein coding sequence. AgrA is the main component of S.aureus agr quorum sensing system.

BBa_K748001
BBa_K748001 Version 1 (Component)
AgrC protein coding sequence. AgrC is main component of S.aureus agr quorum sensing system.

BBa_K1499500
BBa_K1499500 Version 1 (Component)
quorum sensing machinery that activates GFP expression

BBa_J329010
BBa_J329010 Version 1 (Component)
luxIR Quroum Sensing System I

BBa_K1073002
BBa_K1073002 Version 1 (Component)
Inducible promoter of the lux quorum sensing system with RBS

BBa_K1913005
BBa_K1913005 Version 1 (Component)
lux quorum sensing system + GFP reporter

BBa_J329003
BBa_J329003 Version 1 (Component)
Simple Quorum Sensing System Expressing YFP

BBa_K1459003
BBa_K1459003 Version 1 (Component)
PmrA-PmrB(LBT) two-component system

BBa_M39016
BBa_M39016 Version 1 (Component)
Quorum Sensing Device

BBa_K1024002
BBa_K1024002 Version 1 (Component)
Reporter for quorum sensing systems in yeast

BBa_K1344010
BBa_K1344010 Version 1 (Component)
Reversed histidine kinase quorum sensing system from vibrio cholerae

pRhl + RBS
BBa_K1073001 Version 1 (Component)
Inducible promoter of the rhl quorum sensing system with RBS

pLas + RBS
BBa_K1073003 Version 1 (Component)
Inducible promoter of the las quorum sensing system with RBS

BBa_K1513000
BBa_K1513000 Version 1 (Component)
A quorum sensing system which can produce auto-inducer (AHL) itself.

rbs+crtZ
BBa_I742158 Version 1 (Component)
crtZ (beta-carotene hydroxylase) with native rbs

RIP
BBa_K237000 Version 1 (Component)
RIP - Quorum sensing inhibitor of Staphylococcus spp. (Including MRSA)

BBa_K726008
BBa_K726008 Version 1 (Component)
T7 driven lac operated inducer for the rhl quorum-sensing system

BBa_I742156
BBa_I742156 Version 1 (Component)
crtZ native rbs

BBa_I13211
BBa_I13211 Version 1 (Component)
Biobricked version of the natural Lux quorum sensing system

pPQS
BBa_K1157000 Version 1 (Component)
promoter sequence for PQS quorum sensing

zraP
BBa_M50006 Version 1 (Component)
zraP promoter for 2-component lead sensing system in E. coli

ComE
BBa_K1379051 Version 1 (Component)
<i>S. pneumoniae</i> ComE CDS

BBa_K843007
BBa_K843007 Version 1 (Component)
Cell Limiter using quorum sensing

BBa_K726007
BBa_K726007 Version 1 (Component)
T7 driven lac operated inducer for the las quorum-sensing system

BBa_K1157009
BBa_K1157009 Version 1 (Component)
Quorum sensing receptor pqsR generator

BBa_K1929400
BBa_K1929400 Version 1 (Component)
Las Quorum System

BBa_K734004
BBa_K734004 Version 1 (Component)
sfGFP regulated by LasR quorum sensing pathway

BBa_K734003
BBa_K734003 Version 1 (Component)
CRE regulated by LasR quorum sensing pathway

BBa_K553023
BBa_K553023 Version 1 (Component)
Quorum sensing induced mammalian trascription factor

BBa_K356100
BBa_K356100 Version 1 (Component)
Lux Quorum Sensing Bistable Expression